SRR3551304_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551304_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	520588
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3860	0.7414692616810222	No Hit
GCTGTCTCTTATACACATCTGACGCAGCTACCATCGTATGCCGTCTTCTGC	2626	0.5044296065218561	No Hit
CTGTCTCTTATACACATCTGACGCAGCTACCATCGTATGCCGTCTTCTGCT	1850	0.3553673922564485	No Hit
GAATCTGTCTCTTATACACATCTGACGCAGCTACCATCGTATGCCGTCTTC	1707	0.32789845328743655	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAGCTACCATCGTATGCC	1704	0.32732218184053413	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAGCTACCATCGTATGCCG	1565	0.30062160480072536	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCAGCTACCATCGTATGC	1557	0.29908488094231905	No Hit
CCTGTCTCTTATACACATCTGACGCAGCTACCATCGTATGCCGTCTTCTGC	1227	0.23569502178306068	No Hit
TCTGTCTCTTATACACATCTGACGCAGCTACCATCGTATGCCGTCTTCTGC	926	0.17787578661052503	No Hit
AGCTACCATTACATTTATTATTTTACTTCTACTCACAATTCTAGAATTTGC	883	0.16961589587159137	No Hit
CAAGGAAGGTGAAATAATCTATATCTTTTATTTTGTTTTGGTTTAATATAA	723	0.1388814187034661	No Hit
GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA	650	0.12485881349550894	No Hit
CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCAGCTACCATCGTATGC	576	0.11064411780525099	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	557	0.10699439864153612	No Hit
ACTGTCTCTTATACACATCTGACGCAGCTACCATCGTATGCCGTCTTCTGC	540	0.1037288604424228	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GGTCGTA	30	2.163204E-6	45.000004	8
AACGGGC	30	2.163204E-6	45.000004	4
GTCGTAC	30	2.163204E-6	45.000004	9
TCACGGT	20	7.029726E-4	45.0	18
CGGGTAT	95	0.0	45.0	6
CACGGTC	20	7.029726E-4	45.0	19
ACGCATG	25	3.8878556E-5	45.0	1
CCGGCAT	20	7.029726E-4	45.0	36
CGTTGTA	20	7.029726E-4	45.0	19
CGCGCCT	35	1.21021E-7	45.0	17
ATTCGAC	20	7.029726E-4	45.0	30
TAACGCC	20	7.029726E-4	45.0	12
ACTTACG	45	3.8380676E-10	45.0	1
TTATCGC	35	1.21021E-7	45.0	31
ACGGGTA	55	1.8189894E-12	45.0	5
TATTGCG	35	1.21021E-7	45.0	1
ATCCGAC	20	7.029726E-4	45.0	15
ACGATTG	20	7.029726E-4	45.0	1
CTAACGA	20	7.029726E-4	45.0	20
TCTACGG	25	3.8878556E-5	45.0	2