SRR3551303_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551303_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	217161
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2286	1.0526752041112355	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGCCG	1753	0.8072351849549412	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGC	1540	0.7091512748605873	No Hit
GAATCTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGCCGTCTTC	1451	0.6681678570277352	No Hit
GCTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGCCGTCTTCTGC	1363	0.6276449270357016	No Hit
CTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGCCGTCTTCTGCT	730	0.3361561237975511	Illumina Single End Adapter 1 (95% over 21bp)
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGCC	586	0.269845874719678	No Hit
CCTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGCCGTCTTCTGC	578	0.2661619719931295	No Hit
GAATGACTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGCCGTCT	409	0.18833952689479233	No Hit
TCTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGCCGTCTTCTGC	405	0.18649757553151808	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTA	375	0.1726829403069612	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGCTTCTGTT	355	0.16347318349058992	No Hit
GAACTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGCCGTCTTCT	346	0.15932879292322286	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGCCGTC	294	0.13538342520065758	No Hit
ACTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGCCGTCTTCTGC	259	0.11926635077200787	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTACTCA	30	2.157345E-6	45.000004	29
TTGTGCG	35	1.2058445E-7	45.000004	1
GCGAAAG	30	2.157345E-6	45.000004	1
GACCGAT	35	1.2058445E-7	45.000004	9
GCCGGGA	30	2.157345E-6	45.000004	4
ATATGCG	30	2.157345E-6	45.000004	1
TCTACTC	30	2.157345E-6	45.000004	28
CGAGGGA	75	0.0	45.000004	4
GCGATTC	35	1.2058445E-7	45.000004	9
GCGATAT	30	2.157345E-6	45.000004	9
CGTAAGG	30	2.157345E-6	45.000004	2
CGTTTGT	30	2.157345E-6	45.000004	39
CGATATG	30	2.157345E-6	45.000004	10
TCACGGA	20	7.02064E-4	45.0	39
ACAACTT	20	7.02064E-4	45.0	26
ACAACGA	40	6.7702786E-9	45.0	13
CGGGTTC	20	7.02064E-4	45.0	6
CGGGTTA	45	3.8198777E-10	45.0	6
AACCGGA	20	7.02064E-4	45.0	30
AGGTAAG	25	3.8803257E-5	45.0	29