SRR3551297_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551297_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	360223
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	8409	2.3343873100829207	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAGTCTCCTTCGTATGCCG	5033	1.397190073926429	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCAGTCTCCTTCGTATGC	4677	1.2983624032890737	No Hit
GAATCTGTCTCTTATACACATCTGACGCAGTCTCCTTCGTATGCCGTCTTC	4494	1.2475605388884108	No Hit
GCTGTCTCTTATACACATCTGACGCAGTCTCCTTCGTATGCCGTCTTCTGC	2702	0.7500909159048701	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCAGTCTCCTT	1461	0.4055820977561122	No Hit
CTGTCTCTTATACACATCTGACGCAGTCTCCTTCGTATGCCGTCTTCTGCT	1268	0.35200417519147864	No Hit
CCTGTCTCTTATACACATCTGACGCAGTCTCCTTCGTATGCCGTCTTCTGC	1234	0.34256557743397836	No Hit
GAATGACTGTCTCTTATACACATCTGACGCAGTCTCCTTCGTATGCCGTCT	1175	0.32618683426655154	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCAGTCTCCTTCGTA	981	0.2723313058855209	No Hit
GAACTGTCTCTTATACACATCTGACGCAGTCTCCTTCGTATGCCGTCTTCT	940	0.26094946741324127	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCAGTCTCCTTCGTATGCCGTC	801	0.2223622589340492	No Hit
TCTGTCTCTTATACACATCTGACGCAGTCTCCTTCGTATGCCGTCTTCTGC	722	0.20043139943868105	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAGTCTCCTTCGTATGCC	704	0.19543449474353386	No Hit
TGGTTAGGGAATGATACCTGTCTCTTATACACATCTGACGCAGTCTCCTTC	613	0.17017236545140094	No Hit
AGCTACCATTACATTTATTATTTTACTTCTACTCACAATTCTAGAATTTGC	573	0.15906813279551832	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	425	0.1179824719687527	No Hit
TGGTTAGGGAATGATACGGCTGTCTCTTATACACATCTGACGCAGTCTCCT	410	0.1138183847227967	No Hit
TGGTTAGGGAACTGTCTCTTATACACATCTGACGCAGTCTCCTTCGTATGC	406	0.11270796145720845	No Hit
ACTGTCTCTTATACACATCTGACGCAGTCTCCTTCGTATGCCGTCTTCTGC	393	0.10909908584404661	No Hit
CGCTGTCTCTTATACACATCTGACGCAGTCTCCTTCGTATGCCGTCTTCTG	372	0.10326936369970824	No Hit

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CCTTCGA	25	3.8854538E-5	45.000004	41
CTTCGAA	25	3.8854538E-5	45.000004	42
ACGGCCA	30	2.161336E-6	45.000004	30
CGGGACT	50	2.1827873E-11	45.000004	6
GTATCCA	25	3.8854538E-5	45.000004	9
CGTAAGG	30	2.161336E-6	45.000004	2
CGGTCTA	25	3.8854538E-5	45.000004	31
TGTCGTA	25	3.8854538E-5	45.000004	1
TGCGTTG	25	3.8854538E-5	45.000004	1
TCACGAA	20	7.026831E-4	45.0	21
GCCCCGA	20	7.026831E-4	45.0	27
ATTTACT	20	7.026831E-4	45.0	45
GTGCAAG	45	3.8380676E-10	45.0	1
TTAGCCG	20	7.026831E-4	45.0	1
TTCACGA	20	7.026831E-4	45.0	20
CCGTGTT	20	7.026831E-4	45.0	30
CACGAGG	20	7.026831E-4	45.0	2
CGTTATT	105	0.0	45.0	1
ATTCACG	20	7.026831E-4	45.0	19
CGCTATA	20	7.026831E-4	45.0	13

Summary

Basic Statistics

Per base sequence quality

Per sequence quality scores

Per base sequence content

Per sequence GC content

Per base N content

Sequence Length Distribution

Sequence Duplication Levels

Overrepresented sequences

Adapter Content

Kmer Content