##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3551295_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 335464 Sequences flagged as poor quality 0 Sequence length 51 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.488836357999666 31.0 31.0 34.0 30.0 34.0 2 31.647589607230582 31.0 31.0 34.0 30.0 34.0 3 31.64406314835571 31.0 31.0 34.0 30.0 34.0 4 35.41272088808337 37.0 35.0 37.0 33.0 37.0 5 34.289813512031095 37.0 35.0 37.0 32.0 37.0 6 34.712887224858704 37.0 35.0 37.0 32.0 37.0 7 35.34432904872058 37.0 35.0 37.0 33.0 37.0 8 34.739009252855745 36.0 35.0 37.0 32.0 37.0 9 36.49803257577564 39.0 35.0 39.0 32.0 39.0 10 36.47126666348699 38.0 35.0 39.0 32.0 39.0 11 36.72327880189827 39.0 35.0 39.0 33.0 39.0 12 36.66157620489829 39.0 35.0 39.0 32.0 39.0 13 36.59539026542341 39.0 35.0 39.0 32.0 39.0 14 37.63992559559297 39.0 36.0 41.0 32.0 41.0 15 37.62787363174588 40.0 36.0 41.0 32.0 41.0 16 37.89223582858369 40.0 36.0 41.0 33.0 41.0 17 37.599340018601104 39.0 36.0 41.0 32.0 41.0 18 37.50436410464312 39.0 36.0 40.0 33.0 41.0 19 37.3567953640331 39.0 36.0 40.0 32.0 41.0 20 37.00111189278134 39.0 35.0 40.0 32.0 41.0 21 37.159811484987955 39.0 35.0 40.0 32.0 41.0 22 37.20404275868648 39.0 35.0 41.0 32.0 41.0 23 37.129873846373975 39.0 35.0 41.0 32.0 41.0 24 37.037622516872155 39.0 35.0 41.0 32.0 41.0 25 36.988523358691246 39.0 35.0 40.0 32.0 41.0 26 37.00693666086376 39.0 35.0 41.0 32.0 41.0 27 36.83416700450719 39.0 35.0 41.0 32.0 41.0 28 36.659665418644025 39.0 35.0 41.0 31.0 41.0 29 36.68648498795698 39.0 35.0 41.0 31.0 41.0 30 36.38077111105812 39.0 35.0 40.0 30.0 41.0 31 36.173207855388355 38.0 35.0 40.0 30.0 41.0 32 35.782948393866405 39.0 35.0 40.0 27.0 41.0 33 35.49808325185415 39.0 35.0 40.0 25.0 41.0 34 35.17720828464455 38.0 35.0 40.0 23.0 41.0 35 35.043861636420004 39.0 35.0 41.0 23.0 41.0 36 34.82062456776286 38.0 35.0 40.0 21.0 41.0 37 34.69873071328071 38.0 35.0 40.0 20.0 41.0 38 34.43340567095128 38.0 34.0 40.0 20.0 41.0 39 34.43295554813631 38.0 34.0 40.0 18.0 41.0 40 34.33580950563995 38.0 34.0 40.0 18.0 41.0 41 34.20260296186774 38.0 34.0 40.0 19.0 41.0 42 34.13661972670689 38.0 34.0 40.0 18.0 41.0 43 34.14003589058736 38.0 34.0 40.0 18.0 41.0 44 34.35542412896764 38.0 34.0 40.0 18.0 41.0 45 34.32780864712756 38.0 34.0 40.0 20.0 41.0 46 34.28237009038228 38.0 34.0 40.0 20.0 41.0 47 34.05540683948203 37.0 33.0 40.0 20.0 41.0 48 34.05659623685403 37.0 33.0 40.0 20.0 41.0 49 34.089556554503616 37.0 34.0 40.0 20.0 41.0 50 33.884294588987196 37.0 33.0 40.0 18.0 41.0 51 32.98182219254525 36.0 32.0 39.0 18.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 10.0 9 8.0 10 15.0 11 14.0 12 7.0 13 18.0 14 19.0 15 27.0 16 47.0 17 74.0 18 173.0 19 492.0 20 1192.0 21 1965.0 22 2554.0 23 3280.0 24 4111.0 25 5089.0 26 6398.0 27 7256.0 28 6622.0 29 6703.0 30 7221.0 31 8369.0 32 10464.0 33 13927.0 34 22225.0 35 27875.0 36 27694.0 37 37694.0 38 62491.0 39 71402.0 40 27.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 48.415031121074094 15.848794505520711 17.846922471561776 17.889251901843416 2 33.07091073855913 35.97465003696373 17.615601077909997 13.338838146567142 3 24.07769537118737 34.96589798011113 27.773770061765195 13.182636586936303 4 23.21262490162879 17.4039539265018 44.25243841365988 15.130982758209525 5 31.689838551975768 23.841306369684972 27.155819998569147 17.31303507977011 6 19.421159945627547 39.35951398659767 29.01801683638185 12.201309231392935 7 57.98476140509861 5.305189230439034 31.72233086113562 4.987718503326735 8 54.82972837621921 18.28422721961224 19.915996947511506 6.970047456657048 9 50.411966708797365 7.380821787136623 20.947404192402168 21.259807311663845 10 39.41883480790786 18.74746619607469 27.766317697278993 14.067381298738463 11 32.46279779648487 18.682481577754988 31.186952996446713 17.667767629313428 12 24.773448119619392 16.03122838814299 34.76855936851644 24.426764123721174 13 24.516490592135074 20.336012209953974 39.421517659122884 15.725979538788067 14 17.33449788949038 30.82745093363222 31.61889204206711 20.219159134810294 15 14.510349843798439 21.482483962511626 44.14631674337634 19.860849450313594 16 15.267808170176234 22.710931724417524 33.278682660434505 28.74257744497174 17 15.305069992607253 26.072246202275057 37.27732334915222 21.34536045596547 18 15.970118999356114 22.49034173562588 36.06944411322824 25.470095151789764 19 17.355960699210645 23.81268929005795 33.02798511911859 25.803364891612812 20 22.149321536737176 22.954176901247227 39.30973219182982 15.58676937018577 21 18.775487086542817 31.468950468604678 33.400901438008255 16.35466100684425 22 15.655927312617749 21.42942312736985 38.61636420003339 24.298285359979012 23 19.880523692557176 26.45261488565092 35.02402642310352 18.642834998688386 24 19.97233682302721 23.006939641809552 32.966875730331715 24.053847804831516 25 15.316099492046837 33.81286814680562 30.438437507452363 20.43259485369518 26 17.751234111558915 21.341485226432646 37.11068847924069 23.796592182767746 27 23.86813488183531 25.503481744687956 30.781842462976655 19.84654091050008 28 14.738392197076289 27.21275606324375 37.645768249350155 20.403083490329813 29 23.17506498461832 20.20008108172561 35.2151050485298 21.409748885126273 30 20.389967328834093 30.27448548875587 32.68398397443541 16.651563207974625 31 23.69732668781151 24.018076455297738 27.89837359597453 24.386223260916225 32 25.756862137218896 26.645780173133332 31.473719981875846 16.12363770777192 33 23.61862971883719 25.75775642095724 26.959077576133357 23.66453628407221 34 26.93910523931033 22.245606085898935 30.06015548613264 20.7551331886581 35 25.16097107290201 21.73705673336036 31.40664870150001 21.695323492237616 36 27.65810936493931 28.863305749648248 25.965528342832616 17.51305654257983 37 24.074714425392887 22.913039849283383 35.76926287172394 17.242982853599788 38 18.978191400567574 31.413206782247872 26.636837335749885 22.97176448143467 39 25.965528342832616 23.927753797724943 32.36263801779028 17.74407984165216 40 21.269048243626738 24.897157370090383 33.47840602866478 20.355388357618104 41 25.698435599647055 23.832363532301528 27.018696492022986 23.450504376028427 42 21.360861374096775 21.744211003267118 36.67040278539575 20.22452483724036 43 28.4155676913171 22.38660482197792 27.315300598573916 21.882526888131064 44 22.93778169937758 22.26408794982472 32.13042234040016 22.66770801039754 45 20.11870126153626 21.97195526196552 30.487325018481865 27.42201845801636 46 27.67510075596785 25.709763193666085 28.57176925094794 18.04336679941812 47 17.99477738296807 23.746810387999908 39.60156678510958 18.65684544392245 48 22.502265518803807 23.86485584146138 30.00620036725252 23.626678272482295 49 20.399804449955884 19.492702644695107 39.33924355519519 20.768249350153816 50 22.638792836191065 20.475818567715166 33.01486895762287 23.870519638470896 51 21.037130660816064 19.29387356020318 30.17671046669687 29.492285312283883 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 142.0 1 317.0 2 492.0 3 6614.0 4 12736.0 5 8126.0 6 3516.0 7 3305.5 8 3095.0 9 2911.0 10 2727.0 11 2659.0 12 2591.0 13 2466.5 14 2342.0 15 2141.5 16 1941.0 17 1744.0 18 1547.0 19 1559.0 20 1571.0 21 1517.5 22 1464.0 23 1481.0 24 1498.0 25 1607.0 26 2230.0 27 2744.0 28 3142.0 29 3540.0 30 4041.5 31 4543.0 32 4833.0 33 5123.0 34 6009.5 35 6896.0 36 6898.0 37 6900.0 38 7362.5 39 7825.0 40 9819.5 41 11814.0 42 13311.5 43 14809.0 44 17552.0 45 20295.0 46 40681.0 47 61067.0 48 47005.0 49 32943.0 50 32077.5 51 31212.0 52 26036.0 53 20860.0 54 18328.0 55 15796.0 56 13905.5 57 12015.0 58 11044.5 59 10074.0 60 9468.0 61 8862.0 62 7920.5 63 6979.0 64 5916.5 65 4854.0 66 4037.0 67 3220.0 68 2703.5 69 2187.0 70 1756.0 71 1325.0 72 1145.5 73 966.0 74 724.5 75 433.5 76 384.0 77 314.0 78 244.0 79 165.5 80 87.0 81 55.5 82 24.0 83 18.0 84 12.0 85 6.0 86 0.0 87 0.0 88 0.0 89 0.0 90 0.0 91 0.5 92 1.0 93 1.0 94 1.0 95 1.0 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 335464.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 31.06169999010685 #Duplication Level Percentage of deduplicated Percentage of total 1 73.69698874007501 22.891537544184928 2 11.308353919855188 7.025133936809813 3 4.022582495259372 3.7484475195960605 4 2.074523964855588 2.5775296407452495 5 1.1769710073548856 1.827936016375565 6 0.7809419516996475 1.455443076802978 7 0.5714886862760187 1.242598708459219 8 0.5056620765200195 1.256537897379144 9 0.42188365907044645 1.1793981283897257 >10 5.248112852863261 34.50149886005908 >50 0.12467010762341495 2.584638360460332 >100 0.051862764771340615 3.0626554994019948 >500 0.005984165165923917 1.2435261151729322 >1k 0.005984165165923917 4.173278599276175 >5k 0.0029920825829619583 8.009807600347822 >10k+ 9.973608609873195E-4 3.2200324965389777 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GAATGATACGGCTGTCTCTTATACACATCTGACGCGGATAGTGTCGTATGC 10394 3.0983950587842513 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCGGATAGTGTCGTATGCCG 9333 2.7821167099897455 No Hit GAATCTGTCTCTTATACACATCTGACGCGGATAGTGTCGTATGCCGTCTTC 8339 2.485810698018267 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 8183 2.439307943624353 No Hit GCTGTCTCTTATACACATCTGACGCGGATAGTGTCGTATGCCGTCTTCTGC 3620 1.0791023776023656 TruSeq Adapter, Index 15 (95% over 22bp) GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGGATAGTGT 2433 0.725264111797391 No Hit GAATGACTGTCTCTTATACACATCTGACGCGGATAGTGTCGTATGCCGTCT 2286 0.6814442086185104 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGGATAGTGTCGTA 1874 0.5586292418858656 No Hit GAACTGTCTCTTATACACATCTGACGCGGATAGTGTCGTATGCCGTCTTCT 1737 0.5177902845014667 No Hit GAATGATCTGTCTCTTATACACATCTGACGCGGATAGTGTCGTATGCCGTC 1521 0.4534018553406625 No Hit CCTGTCTCTTATACACATCTGACGCGGATAGTGTCGTATGCCGTCTTCTGC 991 0.2954117282331338 TruSeq Adapter, Index 15 (95% over 22bp) CTGTCTCTTATACACATCTGACGCGGATAGTGTCGTATGCCGTCTTCTGCT 926 0.27603558056900296 TruSeq Adapter, Index 14 (95% over 22bp) GAATGATACGGCCTGTCTCTTATACACATCTGACGCGGATAGTGTCGTATG 577 0.17200057234159255 No Hit GAATGCTGTCTCTTATACACATCTGACGCGGATAGTGTCGTATGCCGTCTT 514 0.15322061383635802 No Hit TCTGTCTCTTATACACATCTGACGCGGATAGTGTCGTATGCCGTCTTCTGC 503 0.14994157346242815 TruSeq Adapter, Index 15 (95% over 22bp) GAATGATACGGCGACCACCCTGTCTCTTATACACATCTGACGCGGATAGTG 503 0.14994157346242815 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGGATAGTGTCGTATGCC 472 0.14070064149953496 No Hit GAATGATACGGCGCTGTCTCTTATACACATCTGACGCGGATAGTGTCGTAT 425 0.12669019626547112 No Hit AGCTACCATTACATTTATTATTTTACTTCTACTCACAATTCTAGAATTTGC 425 0.12669019626547112 No Hit GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCGGATAGTGTCGT 416 0.12400734505043759 No Hit AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG 401 0.1195359263587151 No Hit AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG 398 0.11864164262037058 No Hit ACTGTCTCTTATACACATCTGACGCGGATAGTGTCGTATGCCGTCTTCTGC 350 0.10433310280685856 TruSeq Adapter, Index 14 (95% over 21bp) >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.29332506617699666 0.0 2 0.0 0.0 0.0 1.998724155199962 0.0 3 0.0 0.0 0.0 2.3779004602580307 0.0 4 0.0 0.0 0.0 3.3625068561753273 0.0 5 0.0 0.0 0.0 7.139663272363055 0.0 6 0.0 0.0 0.0 7.960019555004412 0.0 7 0.0 0.0 0.0 9.391469725514511 0.0 8 0.0 0.0 0.0 10.903703527055065 0.0 9 0.0 0.0 0.0 11.342796842582214 0.0 10 0.0 0.0 0.0 15.249326306250447 0.0 11 0.0 0.0 0.0 16.732644933584528 0.0 12 0.0 0.0 0.0 21.32717668661913 0.0 13 0.0 0.0 0.0 22.03843035318246 0.0 14 0.0 0.0 0.0 22.422674266091146 0.0 15 0.0 0.0 0.0 23.449311997710634 0.0 16 0.0 0.0 0.0 24.382944220542292 0.0 17 0.0 0.0 0.0 25.37887821047862 0.0 18 0.0 0.0 0.0 26.358715093124747 0.0 19 0.0 0.0 0.0 27.82355185653304 0.0 20 0.0 0.0 0.0 28.559547373190565 0.0 21 0.0 0.0 0.0 29.204027853957502 0.0 22 0.0 0.0 0.0 29.955524288746332 0.0 23 0.0 0.0 0.0 30.549924880165978 0.0 24 0.0 0.0 0.0 31.115708391958602 0.0 25 0.0 0.0 0.0 31.546455059261202 0.0 26 0.0 0.0 0.0 31.963191281329742 0.0 27 0.0 0.0 0.0 32.48127966041066 0.0 28 0.0 0.0 0.0 32.87685116733837 0.0 29 0.0 0.0 0.0 33.315646388286076 0.0 30 0.0 0.0 0.0 33.789020580449765 0.0 31 0.0 0.0 0.0 34.23169103093029 0.0 32 0.0 0.0 0.0 34.681515751317576 0.0 33 0.0 0.0 0.0 35.106300527031216 0.0 34 0.0 0.0 0.0 35.532575775642094 0.0 35 0.0 0.0 0.0 35.99104523883338 0.0 36 0.0 0.0 0.0 36.40241575847185 0.0 37 0.0 0.0 0.0 36.8248157775499 0.0 38 0.0 0.0 0.0 37.23767677008561 0.0 39 0.0 0.0 0.0 37.672000572341595 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AGATCGG 20 7.0261356E-4 45.000004 3 AGATCGA 20 7.0261356E-4 45.000004 24 GCGACCG 40 6.7902874E-9 45.000004 33 GTCGAAT 145 0.0 45.000004 43 GGTCGAA 35 1.208482E-7 45.000004 42 TATGGGT 20 7.0261356E-4 45.000004 4 CAGTTAG 20 7.0261356E-4 45.000004 44 TAAACGG 20 7.0261356E-4 45.000004 2 GCCGGAT 20 7.0261356E-4 45.000004 33 GGATATC 20 7.0261356E-4 45.000004 8 CCTGTCG 20 7.0261356E-4 45.000004 40 CCGTCGA 80 0.0 45.000004 41 CGCTAGG 20 7.0261356E-4 45.000004 2 TACGAAA 20 7.0261356E-4 45.000004 20 TCATGCC 20 7.0261356E-4 45.000004 38 GCCTCTC 20 7.0261356E-4 45.000004 45 GAGCCGA 20 7.0261356E-4 45.000004 9 CGGTCGA 35 1.208482E-7 45.000004 41 ATACGGT 20 7.0261356E-4 45.000004 4 CACCGCG 40 6.7902874E-9 45.000004 38 >>END_MODULE