SRR3551292_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551292_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	676184
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATCTGTCTCTTATACACATCTGACGCCGATTGGATCGTATGCCGTCTTC	16907	2.500354932976823	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCGATTGGATCGTATGCCG	16306	2.4114738000307607	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCGATTGGATCGTATGC	15207	2.248944074393952	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	9278	1.3721117329011039	No Hit
GCTGTCTCTTATACACATCTGACGCCGATTGGATCGTATGCCGTCTTCTGC	5530	0.8178247340960448	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCGATTGGAT	3750	0.5545827762857447	No Hit
GAATGACTGTCTCTTATACACATCTGACGCCGATTGGATCGTATGCCGTCT	3575	0.5287022467257433	No Hit
GAACTGTCTCTTATACACATCTGACGCCGATTGGATCGTATGCCGTCTTCT	3438	0.5084414892987708	No Hit
GAATGCTGTCTCTTATACACATCTGACGCCGATTGGATCGTATGCCGTCTT	3192	0.47206085917442586	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCCGATTGGATCGTATGCCGTC	2627	0.388503720880707	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCCGATTGGATCGTA	2523	0.37312329188504906	No Hit
CTGTCTCTTATACACATCTGACGCCGATTGGATCGTATGCCGTCTTCTGCT	984	0.1455225204973794	Illumina Single End Adapter 2 (95% over 21bp)
CCTGTCTCTTATACACATCTGACGCCGATTGGATCGTATGCCGTCTTCTGC	966	0.14286052317120784	No Hit
GAATGATACGGCCTGTCTCTTATACACATCTGACGCCGATTGGATCGTATG	889	0.1314730901648072	No Hit
GAATGATACGGCGACCACCCTGTCTCTTATACACATCTGACGCCGATTGGA	704	0.10411367320137714	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCGATCG	30	2.16417E-6	45.000004	33
GCTAGCG	30	2.16417E-6	45.000004	1
ACACGTC	20	7.0312235E-4	45.0	26
TAGCGTC	20	7.0312235E-4	45.0	29
ATAGCGT	20	7.0312235E-4	45.0	28
CCGGACT	25	3.889096E-5	45.0	31
CCGACGT	90	0.0	45.0	44
TTCGGTG	20	7.0312235E-4	45.0	29
CATCGGT	20	7.0312235E-4	45.0	9
AAGGGCG	45	3.8380676E-10	45.0	5
CGATCGC	25	3.889096E-5	45.0	34
CGATCCA	20	7.0312235E-4	45.0	41
ATTTCGG	20	7.0312235E-4	45.0	2
CGATCGA	455	0.0	44.505493	41
CCGATGA	3390	0.0	43.40708	18
CGTTTTT	4280	0.0	43.370327	1
CCGATCG	485	0.0	43.144325	40
GATGAAT	3665	0.0	43.096863	20
CGATGAA	3500	0.0	43.00714	19
CTCCGAT	105	0.0	42.857147	38