SRR3551289_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551289_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	917927
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATCTGTCTCTTATACACATCTGACGCGTTTGCTCTCGTATGCCGTCTTC	16806	1.8308645458734736	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGTTTGCTCTCGTATGCCG	14986	1.6325916984683966	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGTTTGCTCTCGTATGC	13475	1.4679816586722036	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	13001	1.4163435654469254	No Hit
GCTGTCTCTTATACACATCTGACGCGTTTGCTCTCGTATGCCGTCTTCTGC	5211	0.5676922021032174	Illumina PCR Primer Index 5 (95% over 23bp)
GAATGACTGTCTCTTATACACATCTGACGCGTTTGCTCTCGTATGCCGTCT	3711	0.40428051468145065	No Hit
GAACTGTCTCTTATACACATCTGACGCGTTTGCTCTCGTATGCCGTCTTCT	3389	0.3692014724482448	Illumina PCR Primer Index 5 (95% over 21bp)
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGTTTGCTCT	3338	0.3636454750759047	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCGTTTGCTCTCGTATGCCGTC	2843	0.3097196182267217	No Hit
CCTGTCTCTTATACACATCTGACGCGTTTGCTCTCGTATGCCGTCTTCTGC	2582	0.28128598461533433	Illumina PCR Primer Index 5 (95% over 23bp)
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGTTTGCTCTCGTA	2492	0.27148128337002836	No Hit
CTGTCTCTTATACACATCTGACGCGTTTGCTCTCGTATGCCGTCTTCTGCT	1648	0.17953497391404763	Illumina PCR Primer Index 5 (95% over 24bp)
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGTTTGCTCTCGTATGCC	1476	0.1607971004230184	No Hit
GAATGCTGTCTCTTATACACATCTGACGCGTTTGCTCTCGTATGCCGTCTT	1300	0.14162346243219778	No Hit
CGCTGTCTCTTATACACATCTGACGCGTTTGCTCTCGTATGCCGTCTTCTG	1123	0.1223408833164293	Illumina PCR Primer Index 5 (95% over 22bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CCGATCG	20	7.032543E-4	45.0	40
TAGCACG	25	3.890189E-5	45.0	1
CGCTCGA	50	2.1827873E-11	45.0	41
TGCGACG	25	3.890189E-5	45.0	1
TATTACG	20	7.032543E-4	45.0	1
CTCGAAT	215	0.0	45.0	43
TTACGAG	20	7.032543E-4	45.0	1
ATAACGC	25	3.890189E-5	45.0	11
CGGTATT	20	7.032543E-4	45.0	43
CGATCGA	20	7.032543E-4	45.0	41
CCGTTGA	20	7.032543E-4	45.0	17
TCGCGGA	20	7.032543E-4	45.0	3
CTTACCG	25	3.890189E-5	45.0	40
CGTTTTT	5225	0.0	43.62201	1
CCGATGA	1530	0.0	42.205883	18
CGCGAGG	80	0.0	42.1875	2
CGATGAA	1585	0.0	41.59306	19
TACGGCT	1705	0.0	41.17302	7
TTCGCGG	55	6.002665E-11	40.909092	2
TGCGGGT	155	0.0	40.645164	4