SRR3551282_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551282_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	195805
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4239	2.164908965552463	No Hit
GAATCTGTCTCTTATACACATCTGACGCAAATGCGGTCGTATGCCGTCTTC	1691	0.8636143101555119	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAAATGCGGTCGTATGCCG	1402	0.7160184877812109	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCAAATGCGGTCGTATGC	1324	0.676182937105794	No Hit
GCTGTCTCTTATACACATCTGACGCAAATGCGGTCGTATGCCGTCTTCTGC	908	0.46372666683690406	No Hit
GAATGCTGTCTCTTATACACATCTGACGCAAATGCGGTCGTATGCCGTCTT	572	0.29212737161972374	No Hit
CCTGTCTCTTATACACATCTGACGCAAATGCGGTCGTATGCCGTCTTCTGC	495	0.2528025331324532	No Hit
CTGTCTCTTATACACATCTGACGCAAATGCGGTCGTATGCCGTCTTCTGCT	397	0.20275273869410892	Illumina Single End Adapter 2 (95% over 21bp)
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCAAATGCGGT	383	0.19560276806005975	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAAATGCGGTCGTATGCC	374	0.19100635836674243	No Hit
GAATGACTGTCTCTTATACACATCTGACGCAAATGCGGTCGTATGCCGTCT	331	0.1690457342764485	No Hit
GAACTGTCTCTTATACACATCTGACGCAAATGCGGTCGTATGCCGTCTTCT	330	0.16853502208830215	No Hit
AGCTACCATTACATTTATTATTTTACTTCTACTCACAATTCTAGAATTTGC	312	0.1593422027016675	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	305	0.1557672173846429	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCAAATGCGGTCGTATGCCGTC	234	0.1195066520262506	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	223	0.11388881795664053	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCAAATGCGGTCGTA	221	0.11286739358034778	No Hit
TCTGTCTCTTATACACATCTGACGCAAATGCGGTCGTATGCCGTCTTCTGC	201	0.1026531498174204	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CCGGTCG	35	1.2050259E-7	45.000004	40
CGGTCGA	35	1.2050259E-7	45.000004	41
GATTCAT	35	1.2050259E-7	45.000004	45
CGGGTTA	25	3.8789192E-5	45.0	6
GAAATCG	25	3.8789192E-5	45.0	7
TAGAGGC	20	7.018941E-4	45.0	4
AAATCGC	25	3.8789192E-5	45.0	8
GATCGTT	20	7.018941E-4	45.0	9
CGACGTT	20	7.018941E-4	45.0	27
ACGTTTT	25	3.8789192E-5	45.0	29
CGCGGGT	20	7.018941E-4	45.0	3
CCCTATG	20	7.018941E-4	45.0	44
TTTCGAC	20	7.018941E-4	45.0	24
AAGACGG	40	6.7648216E-9	45.0	2
CAACACA	20	7.018941E-4	45.0	26
AATGACC	20	7.018941E-4	45.0	12
AGTGAAC	25	3.8789192E-5	45.0	37
CTTGCGG	25	3.8789192E-5	45.0	2
CAAGGAT	20	7.018941E-4	45.0	4
TGTTAGG	25	3.8789192E-5	45.0	2