##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3551277_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 190038 Sequences flagged as poor quality 0 Sequence length 51 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.972958039970955 33.0 31.0 34.0 30.0 34.0 2 32.158305181069046 33.0 31.0 34.0 30.0 34.0 3 32.11356149822667 33.0 31.0 34.0 30.0 34.0 4 35.76568370536419 37.0 35.0 37.0 35.0 37.0 5 34.15386396404929 37.0 35.0 37.0 33.0 37.0 6 34.84662014965428 37.0 35.0 37.0 32.0 37.0 7 35.54960060619455 37.0 35.0 37.0 33.0 37.0 8 35.244156431871524 37.0 35.0 37.0 32.0 37.0 9 37.13519927593428 39.0 37.0 39.0 34.0 39.0 10 36.92597796230228 39.0 37.0 39.0 33.0 39.0 11 37.13987728770036 39.0 37.0 39.0 34.0 39.0 12 37.14099285406077 39.0 37.0 39.0 34.0 39.0 13 37.13370483797977 39.0 37.0 39.0 33.0 39.0 14 38.29647228449047 40.0 38.0 41.0 34.0 41.0 15 38.31821004220208 40.0 38.0 41.0 34.0 41.0 16 38.526257906313475 40.0 38.0 41.0 34.0 41.0 17 38.353808185731275 40.0 38.0 41.0 34.0 41.0 18 38.16640882349846 39.0 38.0 41.0 34.0 41.0 19 38.03281975183911 39.0 37.0 41.0 34.0 41.0 20 37.74437744030141 40.0 35.0 41.0 34.0 41.0 21 37.80926446289689 39.0 35.0 41.0 34.0 41.0 22 37.83590124080447 40.0 35.0 41.0 34.0 41.0 23 37.81626832528231 40.0 35.0 41.0 34.0 41.0 24 37.75913238404951 40.0 35.0 41.0 34.0 41.0 25 37.63149475368084 39.0 35.0 41.0 34.0 41.0 26 37.67479661962344 39.0 35.0 41.0 34.0 41.0 27 37.60704174954483 40.0 35.0 41.0 33.0 41.0 28 37.46839579452531 40.0 35.0 41.0 33.0 41.0 29 37.4887601427083 40.0 35.0 41.0 33.0 41.0 30 37.21670402761553 40.0 35.0 41.0 33.0 41.0 31 37.05845672970669 39.0 35.0 41.0 33.0 41.0 32 36.75113398372957 40.0 35.0 41.0 31.0 41.0 33 36.50265736326419 40.0 35.0 41.0 30.0 41.0 34 36.21415190646081 40.0 35.0 41.0 29.0 41.0 35 36.056988602279546 40.0 35.0 41.0 26.0 41.0 36 35.88491775329145 40.0 35.0 41.0 25.0 41.0 37 35.816605100032625 40.0 35.0 41.0 24.0 41.0 38 35.66376724655069 39.0 35.0 41.0 24.0 41.0 39 35.59924330923289 39.0 35.0 41.0 23.0 41.0 40 35.515917869057766 39.0 35.0 41.0 23.0 41.0 41 35.391184920910554 39.0 35.0 41.0 23.0 41.0 42 35.478956840210905 39.0 35.0 41.0 23.0 41.0 43 35.429156274008356 39.0 35.0 41.0 23.0 41.0 44 35.57357475873246 39.0 35.0 41.0 23.0 41.0 45 35.5800366242541 39.0 35.0 41.0 23.0 41.0 46 35.49773203254086 39.0 35.0 41.0 23.0 41.0 47 35.31340047779918 39.0 35.0 41.0 23.0 41.0 48 35.34954061819215 39.0 35.0 41.0 23.0 41.0 49 35.353013607804755 39.0 35.0 41.0 23.0 41.0 50 35.23514770730065 39.0 35.0 41.0 23.0 41.0 51 34.43559182900262 38.0 34.0 40.0 21.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 3.0 9 5.0 10 6.0 11 8.0 12 13.0 13 10.0 14 18.0 15 17.0 16 15.0 17 27.0 18 49.0 19 100.0 20 231.0 21 555.0 22 924.0 23 1309.0 24 1793.0 25 2525.0 26 3241.0 27 3752.0 28 3457.0 29 2862.0 30 2771.0 31 3217.0 32 3997.0 33 5688.0 34 10396.0 35 13656.0 36 13403.0 37 19170.0 38 37174.0 39 59627.0 40 19.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.370273313758304 17.59700691440659 20.1964870183858 18.836232753449313 2 35.22874372493922 31.237436723181677 19.66554057609531 13.86827897578379 3 25.84483103379324 30.66491964764942 30.39918332123049 13.09106599732685 4 24.81240593986466 20.402761552952565 39.75152337953462 15.033309127648153 5 29.253622959618603 26.024268830444434 27.587640366663507 17.134467843273452 6 21.45886612151254 36.32957619002515 29.325187594060136 12.886370094402173 7 62.59853292499395 5.800418863595702 27.033014449741632 4.568033761668719 8 61.78238036603205 14.101390248266135 18.5452383207569 5.570991064944906 9 56.63288394952588 7.2222397625738015 20.088087645628768 16.056788642271545 10 38.52650522527073 19.160378450625664 27.38031341100201 14.93280291310159 11 29.48199833717467 20.814258200991382 32.093055073195885 17.610688388638064 12 23.494774729264673 18.188993780191332 34.96037634578347 23.355855144760522 13 23.533714309769625 20.56430819099338 39.456319262463296 16.445658236773696 14 17.627000915606352 28.876856207705824 33.34754101811217 20.148601858575653 15 15.241688504404383 23.394794725265474 41.790063040023576 19.57345373030657 16 15.953651374988159 24.436691609046612 34.212631157978926 25.3970258579863 17 16.275166019427694 27.072480240793944 36.482703459308134 20.169650280470222 18 17.202349003883434 23.459518622591272 36.200128395373554 23.13800397815174 19 18.01271324682432 24.739262673781035 34.62307538492301 22.624948694471634 20 20.724802407939467 24.281459497574172 38.353381955187906 16.640356139298458 21 19.47242130521264 29.667750660394237 34.46994811564003 16.389879918753092 22 16.95082036224334 22.203980256580262 37.70772161357202 23.137477767604373 23 18.63522032435618 26.192656205600983 35.74495627190352 19.42716719813932 24 18.480514423431103 24.918174259884864 33.93531819951799 22.665993117166042 25 16.45828728991044 31.113251034003724 32.3414264515518 20.08703522453404 26 15.558993464465 24.459318662583275 37.67088687525653 22.3108009976952 27 20.224902387943462 26.828318546816952 32.91394352708406 20.032835538155528 28 15.011734495206221 25.893768614698114 39.01588103431945 20.078615855776214 29 18.712047064271356 21.384144223786823 37.78191730075038 22.121891411191445 30 17.258653532451405 29.797724665593194 34.77409781201655 18.169523989938856 31 19.240888664372388 24.11149349077553 32.479819825508585 24.1677980193435 32 22.09979056820215 26.401035582357213 30.615982066744547 20.88319178269609 33 21.424662435933868 24.295667182353004 29.77667624369863 24.502994138014504 34 19.445058356749705 23.239036403245667 33.298077226659935 24.0178280133447 35 21.97507866847683 25.296519643439737 29.978741093886484 22.74966059419695 36 18.990412443827022 28.535345562466453 33.17283911638725 19.301402877319273 37 18.123217461770803 27.556593944369023 32.08884538881697 22.231343205043203 38 21.369936539007988 25.305465222744928 30.3476146875888 22.97698355065829 39 20.75058672476031 24.68506298740252 29.27046169713426 25.293888590702913 40 24.060451067681203 23.27692356265589 30.96906934402593 21.69355602563698 41 18.85517633315442 27.254022879634597 28.77792862480136 25.112872162409623 42 20.588513876172136 24.622970142813543 33.8690156705501 20.919500310464223 43 20.620086509013987 26.45734011092518 30.44654227049327 22.47603110956756 44 20.081246908513034 24.224102547911468 32.92920363295762 22.765446910617875 45 19.410328460623667 22.11136720024416 32.512971089992526 25.965333249139643 46 23.557393784401015 26.009008724570876 29.810879929277302 20.622717561750807 47 18.031656826529428 23.979940853934476 37.349372230816996 20.6390300887191 48 20.279628284869343 23.997305801997495 32.13357328534293 23.589492627790232 49 19.906545006788114 21.35046674875551 36.330102400572514 22.412885843883853 50 20.39592081583683 21.79774571401509 33.738515454803775 24.0678180153443 51 19.631863101064 21.124196213388903 31.683663267346528 27.560277418200567 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 119.0 1 259.0 2 399.0 3 3936.0 4 7473.0 5 4782.0 6 2091.0 7 1990.0 8 1889.0 9 1728.5 10 1568.0 11 1554.0 12 1540.0 13 1472.5 14 1405.0 15 1296.0 16 1187.0 17 1134.5 18 1082.0 19 984.5 20 887.0 21 927.5 22 968.0 23 1011.0 24 1054.0 25 1147.0 26 1642.5 27 2045.0 28 2213.0 29 2381.0 30 2779.5 31 3178.0 32 3472.0 33 3766.0 34 4310.0 35 4854.0 36 4943.0 37 5032.0 38 5437.0 39 5842.0 40 6768.5 41 7695.0 42 8538.5 43 9382.0 44 10743.0 45 12104.0 46 19988.0 47 27872.0 48 23131.5 49 18391.0 50 17649.0 51 16907.0 52 14350.0 53 11793.0 54 10117.5 55 8442.0 56 7621.0 57 6800.0 58 6184.0 59 5568.0 60 4991.5 61 4415.0 62 3873.5 63 3332.0 64 2907.0 65 2482.0 66 2147.0 67 1812.0 68 1438.5 69 1065.0 70 893.5 71 722.0 72 638.5 73 555.0 74 480.0 75 300.0 76 195.0 77 124.0 78 53.0 79 43.0 80 33.0 81 21.0 82 9.0 83 5.5 84 2.0 85 2.5 86 3.0 87 2.0 88 1.0 89 0.5 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 190038.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 40.62819015144339 #Duplication Level Percentage of deduplicated Percentage of total 1 77.10370552655779 31.32584009513887 2 8.289189084174124 6.735495006261906 3 3.1408255514253516 3.8281817320746376 4 1.7834708388918392 2.8983676948820762 5 1.4493129039360695 2.9441480125027626 6 1.1203357121579092 2.731032740820257 7 1.0542812366433965 2.9983476988812763 8 0.8211477936509993 2.6689398962312803 9 0.7602740613140955 2.7799703217251284 >10 4.376432799285057 26.310001157663205 >50 0.046626688598479446 1.2281754175480692 >100 0.04274113121527283 3.338279712478557 >500 0.003885557383206621 1.1055683600122082 >1k 0.007771114766413242 9.107652153779771 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4771 2.510550521474652 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCTATCGCGATCGTATGCCG 4184 2.2016649301718605 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCTATCGCGATCGTATGC 3753 1.974868184257885 No Hit GAATCTGTCTCTTATACACATCTGACGCTATCGCGATCGTATGCCGTCTTC 2583 1.359201843841758 No Hit GCTGTCTCTTATACACATCTGACGCTATCGCGATCGTATGCCGTCTTCTGC 1016 0.5346299161220387 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTATCGCGAT 1001 0.5267367579115756 No Hit GAATGACTGTCTCTTATACACATCTGACGCTATCGCGATCGTATGCCGTCT 823 0.433071280480746 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCTATCGCGATCGTA 654 0.3441416979761942 No Hit GAATGATCTGTCTCTTATACACATCTGACGCTATCGCGATCGTATGCCGTC 624 0.3283553815552679 No Hit GAACTGTCTCTTATACACATCTGACGCTATCGCGATCGTATGCCGTCTTCT 466 0.24521411507172247 No Hit GAATGCTGTCTCTTATACACATCTGACGCTATCGCGATCGTATGCCGTCTT 462 0.24310927288226564 No Hit CCTGTCTCTTATACACATCTGACGCTATCGCGATCGTATGCCGTCTTCTGC 414 0.2178511666087835 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTATCGCGATCGTATGCC 308 0.1620728485881771 No Hit CTGTCTCTTATACACATCTGACGCTATCGCGATCGTATGCCGTCTTCTGCT 295 0.15523211147244234 Illumina Single End Adapter 1 (95% over 21bp) GAATGATACGGCCTGTCTCTTATACACATCTGACGCTATCGCGATCGTATG 260 0.13681474231469495 No Hit AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG 230 0.12102842589376862 No Hit AGCTACCATTACATTTATTATTTTACTTCTACTCACAATTCTAGAATTTGC 226 0.11892358370431176 No Hit CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 216 0.11366147823066966 No Hit GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCTATCGCGATCGT 211 0.1110304254938486 No Hit GAATGATACGGCGACCACCGATGAATGATACGGCGAACCCCGATCGAATGC 204 0.10734695166229911 No Hit GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA 199 0.10471589892547806 No Hit GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT 194 0.102084846188657 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.15891558530399183 0.0 2 0.0 0.0 0.0 1.0797840431913617 0.0 3 0.0 0.0 0.0 1.4523411107252233 0.0 4 0.0 0.0 0.0 2.096422820699018 0.0 5 0.0 0.0 0.0 4.575400709331817 0.0 6 0.0 0.0 0.0 5.580989065344826 0.0 7 0.0 0.0 0.0 6.755491007061746 0.0 8 0.0 0.0 0.0 8.123638430208695 0.0 9 0.0 0.0 0.0 8.599858975573307 0.0 10 0.0 0.0 0.0 11.89288458097854 0.0 11 0.0 0.0 0.0 13.416264115597933 0.0 12 0.0 0.0 0.0 16.69455582567697 0.0 13 0.0 0.0 0.0 17.414938065018575 0.0 14 0.0 0.0 0.0 17.75066039423694 0.0 15 0.0 0.0 0.0 18.457361159347077 0.0 16 0.0 0.0 0.0 19.31350571990865 0.0 17 0.0 0.0 0.0 20.093349751102412 0.0 18 0.0 0.0 0.0 21.07631105357876 0.0 19 0.0 0.0 0.0 22.215556888622274 0.0 20 0.0 0.0 0.0 22.84964059819615 0.0 21 0.0 0.0 0.0 23.46320209642282 0.0 22 0.0 0.0 0.0 24.12570117555436 0.0 23 0.0 0.0 0.0 24.710847304223368 0.0 24 0.0 0.0 0.0 25.219692903524557 0.0 25 0.0 0.0 0.0 25.65486902619476 0.0 26 0.0 0.0 0.0 26.126353676633094 0.0 27 0.0 0.0 0.0 26.59783832707143 0.0 28 0.0 0.0 0.0 27.00670392237342 0.0 29 0.0 0.0 0.0 27.446089729422535 0.0 30 0.0 0.0 0.0 27.88494932592429 0.0 31 0.0 0.0 0.0 28.29749839505783 0.0 32 0.0 0.0 0.0 28.713730938022923 0.0 33 0.0 0.0 0.0 29.09839084814616 0.0 34 0.0 0.0 0.0 29.50304675906924 0.0 35 0.0 0.0 0.0 29.918226880939603 0.0 36 0.0 0.0 0.0 30.333407002809963 0.0 37 0.0 0.0 0.0 30.735431860996222 0.0 38 0.0 0.0 0.0 31.149033351224492 0.0 39 0.0 0.0 0.0 31.5121186289058 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTTATT 110 0.0 45.000004 1 CGGACAT 25 3.8784812E-5 45.0 38 CGGGTCT 35 1.2047894E-7 45.0 6 CGGGTAC 25 3.8784812E-5 45.0 6 TAATACG 25 3.8784812E-5 45.0 4 ACAGTCG 25 3.8784812E-5 45.0 33 TTGTGCG 25 3.8784812E-5 45.0 1 TAGCGAG 20 7.0184126E-4 45.0 1 CCTACCT 20 7.0184126E-4 45.0 24 TACGGGA 45 3.8198777E-10 45.0 4 TGTGCGG 35 1.2047894E-7 45.0 2 CGAATGC 20 7.0184126E-4 45.0 45 GGAGTAG 20 7.0184126E-4 45.0 1 GACGGGT 35 1.2047894E-7 45.0 4 GCAATTT 20 7.0184126E-4 45.0 16 CAGTCCG 20 7.0184126E-4 45.0 1 GGCTGAC 20 7.0184126E-4 45.0 8 CGATCGA 20 7.0184126E-4 45.0 41 GGCTACG 20 7.0184126E-4 45.0 1 TCCGCTA 30 2.1559117E-6 44.999996 2 >>END_MODULE