SRR3551275_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551275_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	476037
Sequences flagged as poor quality	0
Sequence length	51
%GC	43

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	14205	2.9840117469860536	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGC	6398	1.3440131754464464	No Hit
GAATCTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGCCGTCTTC	6311	1.3257372851269964	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGCCG	6306	1.32468694660289	No Hit
GCTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGCCGTCTTCTGC	3953	0.8303976371584562	No Hit
GAATGACTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGCCGTCT	1631	0.3426204265634814	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGCTTCTGTT	1618	0.339889546400805	No Hit
CTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGCCGTCTTCTGCT	1592	0.3344277860754521	Illumina Single End Adapter 1 (95% over 21bp)
GAACTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGCCGTCTTCT	1491	0.31321094788850445	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTA	1368	0.287372620195489	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGCCGTC	1327	0.2787598442978172	No Hit
CCTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGCCGTCTTCTGC	1287	0.27035713610496664	No Hit
GAATGCTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGCCGTCTT	1042	0.218890548423757	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGCC	887	0.18633005417646106	No Hit
TCTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGCCGTCTTCTGC	866	0.18191863237521452	No Hit
ACTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGCCGTCTTCTGC	638	0.13402319567596635	No Hit
AGCTACCATTACATTTATTATTTTACTTCTACTCACAATTCTAGAATTTGC	569	0.11952852404329915	No Hit
CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	482	0.10125263372384921	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TAATACG	35	1.209919E-7	45.000004	4
CGACGGG	70	0.0	45.000004	3
TACGGGA	95	0.0	45.000004	4
CGGCGTA	20	7.0291176E-4	45.0	36
GTACCGC	20	7.0291176E-4	45.0	31
GTACAAT	20	7.0291176E-4	45.0	9
GTTTACG	20	7.0291176E-4	45.0	1
AAGCGTG	20	7.0291176E-4	45.0	1
TCGATTA	20	7.0291176E-4	45.0	41
TAACGGG	90	0.0	45.0	3
TATTGCG	25	3.8873506E-5	45.0	1
TCTACGG	20	7.0291176E-4	45.0	2
AGACACG	25	3.8873506E-5	45.0	24
CATACGG	25	3.8873506E-5	45.0	2
TCATCGA	25	3.8873506E-5	45.0	16
TAGGCGA	20	7.0291176E-4	45.0	19
TCATACA	20	7.0291176E-4	45.0	16
GAACCAC	20	7.0291176E-4	45.0	16
CGATCGA	55	1.8189894E-12	45.0	41
TCGACAC	20	7.0291176E-4	45.0	34