SRR3551274_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551274_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	746267
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	7722	1.0347502971456597	No Hit
GAATCTGTCTCTTATACACATCTGACGCGCTATCTGTCGTATGCCGTCTTC	6191	0.8295958417027686	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGCTATCTGTCGTATGC	5058	0.6777735046571803	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGCTATCTGTCGTATGCCG	4894	0.655797455870352	No Hit
GCTGTCTCTTATACACATCTGACGCGCTATCTGTCGTATGCCGTCTTCTGC	2733	0.3662228130146449	TruSeq Adapter, Index 13 (95% over 21bp)
GAACTGTCTCTTATACACATCTGACGCGCTATCTGTCGTATGCCGTCTTCT	1605	0.21507047745645994	No Hit
GAATGCTGTCTCTTATACACATCTGACGCGCTATCTGTCGTATGCCGTCTT	1288	0.17259238315509062	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGCTATCTGT	1251	0.16763437214830618	No Hit
GAATGACTGTCTCTTATACACATCTGACGCGCTATCTGTCGTATGCCGTCT	1117	0.14967833228589766	No Hit
CTGTCTCTTATACACATCTGACGCGCTATCTGTCGTATGCCGTCTTCTGCT	1102	0.14766832782368777	TruSeq Adapter, Index 19 (95% over 22bp)
GAATGATCTGTCTCTTATACACATCTGACGCGCTATCTGTCGTATGCCGTC	1017	0.13627830253783163	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGCTATCTGTCGTA	985	0.1319902930184505	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGCTATCTGTCGTATGCC	832	0.11148824750390947	No Hit
CCTGTCTCTTATACACATCTGACGCGCTATCTGTCGTATGCCGTCTTCTGC	768	0.1029122284651472	TruSeq Adapter, Index 13 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTATACG	30	2.1644737E-6	45.000004	1
GTAACGG	65	0.0	45.000004	2
TTCTACG	20	7.0316956E-4	45.0	1
TCGGACA	25	3.889486E-5	45.0	13
ACGGCTA	40	6.8102963E-9	45.0	30
CGTAAGC	20	7.0316956E-4	45.0	43
TTTGCGC	20	7.0316956E-4	45.0	19
AGAATCG	20	7.0316956E-4	45.0	26
CGTTTTT	3795	0.0	42.806324	1
CGAACAC	70	0.0	41.785713	34
CACGACG	55	6.002665E-11	40.90909	26
CGATGAA	820	0.0	40.60976	19
CCGATGA	830	0.0	39.849396	18
CGAATAT	85	0.0	39.705883	14
CCCGTCG	35	6.2453437E-6	38.571426	40
TAATACG	65	9.094947E-12	38.076927	4
GCGACTA	30	1.1395379E-4	37.500004	33
CGACGGT	60	1.546141E-10	37.500004	28
TATTGCG	30	1.1395379E-4	37.500004	1
GTCGTTT	30	1.1395379E-4	37.500004	9