##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3551274_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 746267 Sequences flagged as poor quality 0 Sequence length 51 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.56921852366512 31.0 31.0 34.0 30.0 34.0 2 31.713981725039428 33.0 31.0 34.0 30.0 34.0 3 31.681876593766038 33.0 31.0 34.0 30.0 34.0 4 35.4191690105552 37.0 35.0 37.0 33.0 37.0 5 34.25132827794878 37.0 35.0 37.0 32.0 37.0 6 34.714300645747436 37.0 35.0 37.0 32.0 37.0 7 35.42536920431964 37.0 35.0 37.0 32.0 37.0 8 35.18857191862966 37.0 35.0 37.0 32.0 37.0 9 37.07988159733715 39.0 37.0 39.0 33.0 39.0 10 36.63892547841456 39.0 35.0 39.0 32.0 39.0 11 36.78011489185506 39.0 37.0 39.0 33.0 39.0 12 36.840484705876044 39.0 37.0 39.0 33.0 39.0 13 36.9620872958338 39.0 37.0 39.0 33.0 39.0 14 38.0264824787911 40.0 37.0 41.0 33.0 41.0 15 38.12395563518151 40.0 37.0 41.0 33.0 41.0 16 38.20098302618232 40.0 37.0 41.0 34.0 41.0 17 38.0679381508227 40.0 37.0 41.0 33.0 41.0 18 37.94411383593272 39.0 37.0 41.0 33.0 41.0 19 37.867394645616116 39.0 37.0 41.0 33.0 41.0 20 37.86922776968565 40.0 36.0 41.0 33.0 41.0 21 37.75173228884568 39.0 36.0 41.0 33.0 41.0 22 37.85824242529819 40.0 36.0 41.0 33.0 41.0 23 37.913581868151745 40.0 36.0 41.0 34.0 41.0 24 37.8052707677011 40.0 36.0 41.0 33.0 41.0 25 37.50010251022757 39.0 35.0 41.0 33.0 41.0 26 37.640465141832614 39.0 36.0 41.0 33.0 41.0 27 37.67505865863022 40.0 36.0 41.0 33.0 41.0 28 37.50957499125648 40.0 36.0 41.0 33.0 41.0 29 37.509805471768146 40.0 36.0 41.0 33.0 41.0 30 37.231062072957805 40.0 35.0 41.0 32.0 41.0 31 37.1446305410798 39.0 35.0 41.0 32.0 41.0 32 37.10038096284574 40.0 35.0 41.0 32.0 41.0 33 37.00227800505717 40.0 36.0 41.0 31.0 41.0 34 36.82889770015289 40.0 35.0 41.0 31.0 41.0 35 36.760529408375284 40.0 35.0 41.0 31.0 41.0 36 36.58467947798844 40.0 35.0 41.0 30.0 41.0 37 36.59398043863657 40.0 35.0 41.0 30.0 41.0 38 36.38971306516301 40.0 35.0 41.0 30.0 41.0 39 36.325032461572064 39.0 35.0 41.0 30.0 41.0 40 36.238773790077815 39.0 35.0 41.0 29.0 41.0 41 36.10596877525068 39.0 35.0 41.0 29.0 41.0 42 36.19863132096153 39.0 35.0 41.0 29.0 41.0 43 36.12163073002022 39.0 35.0 41.0 29.0 41.0 44 36.21060424754143 39.0 35.0 41.0 29.0 41.0 45 36.198782741297684 39.0 35.0 41.0 29.0 41.0 46 36.12092856846142 39.0 35.0 41.0 29.0 41.0 47 36.03126226940224 39.0 35.0 41.0 29.0 41.0 48 35.98620198936842 39.0 35.0 41.0 29.0 41.0 49 35.95783412639176 39.0 35.0 41.0 28.0 41.0 50 35.82734061669617 39.0 35.0 41.0 28.0 41.0 51 34.95427775849662 38.0 34.0 40.0 25.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 6 1.0 7 6.0 8 10.0 9 19.0 10 47.0 11 23.0 12 38.0 13 36.0 14 45.0 15 59.0 16 126.0 17 142.0 18 296.0 19 565.0 20 1128.0 21 1917.0 22 2891.0 23 4039.0 24 5237.0 25 7052.0 26 9241.0 27 10558.0 28 10416.0 29 10744.0 30 11613.0 31 14216.0 32 18104.0 33 25182.0 34 41134.0 35 51064.0 36 59355.0 37 88505.0 38 154521.0 39 217877.0 40 60.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.80550124821277 19.02295023094951 22.31319353528965 14.858354985548067 2 34.109909723999586 27.078646114594374 23.150561394246296 15.660882767159743 3 29.531789560572825 26.888365692171835 28.994314367377893 14.585530379877444 4 27.708179512158516 23.712290641285225 31.88001077362392 16.699519072932343 5 26.52589488748665 30.230199111042026 25.484042574574516 17.759863426896807 6 24.9693474319513 35.31189239240111 25.92637755655818 13.792382619089413 7 73.37561489386506 6.017149358071575 15.989987497772246 4.617248250291116 8 73.73178768456866 8.776885484685776 12.420755574077374 5.07057125666819 9 67.44141171993402 8.169194135610981 14.365367891116717 10.024026253338283 10 37.11446439411096 28.435265126288577 20.900696399546007 13.549574080054457 11 27.624027325340663 24.930621345979386 29.740294023452734 17.705057305227218 12 24.498470386604257 21.50972775159561 33.33337800009916 20.65842386170097 13 24.36487209001604 22.772814555648313 34.350574258274854 18.511739096060793 14 18.88854793257641 29.007982397720923 31.60209415664903 20.501375513053638 15 18.189870381512247 25.51982065400185 36.58904922768929 19.701259736796615 16 20.25441296479678 26.249586274081526 31.951164931586145 21.54483582953554 17 20.493067494609836 26.924277771896655 30.842982471421088 21.73967226207242 18 21.035768699406514 24.99735349412476 31.78634456568494 22.180533240783795 19 22.45724385508136 25.845307376582376 29.9774745499935 21.719974218342763 20 24.497666384819375 25.24136803583704 31.697234367860293 18.56373121148329 21 22.958136967064068 27.315424640242703 30.903148604989905 18.823289787703327 22 20.906056411445235 24.046755383796953 32.30117370860563 22.74601449615218 23 21.518839771824293 26.303856394561198 31.659178283375788 20.51812555023872 24 20.729980020555647 25.40685840322566 31.372953647957097 22.4902079282616 25 20.33132913555068 29.089320578291684 29.528707553730772 21.050642732426866 26 20.64140582392093 25.701525057385627 31.46072384280693 22.19634527588651 27 22.314131537372013 25.696701046676324 30.21666508099648 21.772502334955185 28 19.828292018808284 27.270132539694238 32.26097361936143 20.640601822136045 29 22.40444773787398 24.674144776601402 31.353925605714846 21.567481879809776 30 21.020224664898755 25.979441674360515 30.9101166204589 22.09021704028183 31 21.588519926514238 25.71184308029164 29.470417424326683 23.229219568867443 32 22.809932638050455 27.90582995094249 29.424589322588297 19.85964808841876 33 21.656458077336932 25.546486713200505 29.85352427482389 22.943530934638677 34 21.7883143700579 24.921509325750705 30.44004357689674 22.850132727294657 35 21.522725780451232 25.08539168956955 29.63805179647499 23.753830733504227 36 22.539252037139523 26.657081178720215 29.661769849129065 21.141896935011196 37 20.742576048518828 26.782371456864634 29.961796515188265 22.513255979428273 38 20.109022642030265 26.578825004991515 30.389927465638973 22.922224887339247 39 22.65878030249227 25.668024983015464 29.030762448292634 22.64243226619963 40 21.769420328113128 24.447148272669164 32.05648916540595 21.72694223381176 41 20.965418543229166 25.40779640530802 29.317121084008807 24.309663967454007 42 21.77223433436022 25.425082443683024 31.088471016405656 21.714212205551096 43 23.572930331905336 25.1723578826345 29.168782754697713 22.08592903076245 44 21.510799753975455 25.096513714260443 29.815870191231824 23.576816340532275 45 21.155832965949184 23.94893516663607 29.743108029699826 25.152123837714917 46 22.612818200456406 25.98935769637409 29.152836719297515 22.24498738387199 47 20.644755831357944 24.991323480738128 32.32422175977231 22.03969892813162 48 20.819224218677764 24.349730056400727 30.4805116667359 24.35053405818561 49 21.089502818696257 24.006957295445197 32.66846852400012 22.235071361858424 50 20.715775989022696 23.968633210365727 31.514055961204235 23.801534839407342 51 20.762274092248482 23.16329142250696 29.86759430605936 26.2068401791852 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 290.0 1 681.0 2 1072.0 3 7032.0 4 12992.0 5 8736.0 6 4480.0 7 4303.5 8 4127.0 9 3999.5 10 3872.0 11 3803.5 12 3735.0 13 3551.0 14 3367.0 15 3271.5 16 3176.0 17 3032.0 18 2888.0 19 2841.0 20 2794.0 21 3015.5 22 3237.0 23 3505.5 24 3774.0 25 4390.5 26 6220.5 27 7434.0 28 8947.0 29 10460.0 30 12117.0 31 13774.0 32 15386.5 33 16999.0 34 18705.0 35 20411.0 36 22500.5 37 24590.0 38 26451.5 39 28313.0 40 30953.5 41 33594.0 42 36109.5 43 38625.0 44 43684.0 45 48743.0 46 64485.5 47 80228.0 48 74448.0 49 68668.0 50 66802.0 51 64936.0 52 56952.0 53 48968.0 54 44166.0 55 39364.0 56 37046.0 57 34728.0 58 31673.5 59 28619.0 60 27014.0 61 25409.0 62 22718.0 63 20027.0 64 16791.5 65 13556.0 66 11244.5 67 8933.0 68 7498.5 69 6064.0 70 5010.5 71 3957.0 72 3119.0 73 2281.0 74 1783.5 75 1037.0 76 788.0 77 575.0 78 362.0 79 295.5 80 229.0 81 130.5 82 32.0 83 41.5 84 51.0 85 30.5 86 10.0 87 11.0 88 12.0 89 7.5 90 3.0 91 2.5 92 2.0 93 1.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 746267.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 33.21863508315965 #Duplication Level Percentage of deduplicated Percentage of total 1 75.21216024991968 24.984453051582072 2 8.303297626413508 5.5164842767739195 3 2.855402270284372 2.8455769809660647 4 1.6298167180875511 2.16561147242333 5 1.174013989272355 1.9499571146081431 6 0.9313493446558916 1.856289240903837 7 0.8377198094956912 1.9479536057499973 8 0.756847790002144 2.0113160439661653 9 0.668985372203529 2.0000502859680687 >10 7.514527818518074 45.48526049618391 >50 0.07159667479468926 1.632671162625105 >100 0.037246824969436196 2.3431498195039606 >500 0.0024831216646290797 0.5900492270189509 >1k 0.0033108288861721062 2.063110146755218 >5k 0.0012415608323145398 2.60806707497123 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 7722 1.0347502971456597 No Hit GAATCTGTCTCTTATACACATCTGACGCGCTATCTGTCGTATGCCGTCTTC 6191 0.8295958417027686 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCGCTATCTGTCGTATGC 5058 0.6777735046571803 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCGCTATCTGTCGTATGCCG 4894 0.655797455870352 No Hit GCTGTCTCTTATACACATCTGACGCGCTATCTGTCGTATGCCGTCTTCTGC 2733 0.3662228130146449 TruSeq Adapter, Index 13 (95% over 21bp) GAACTGTCTCTTATACACATCTGACGCGCTATCTGTCGTATGCCGTCTTCT 1605 0.21507047745645994 No Hit GAATGCTGTCTCTTATACACATCTGACGCGCTATCTGTCGTATGCCGTCTT 1288 0.17259238315509062 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGCTATCTGT 1251 0.16763437214830618 No Hit GAATGACTGTCTCTTATACACATCTGACGCGCTATCTGTCGTATGCCGTCT 1117 0.14967833228589766 No Hit CTGTCTCTTATACACATCTGACGCGCTATCTGTCGTATGCCGTCTTCTGCT 1102 0.14766832782368777 TruSeq Adapter, Index 19 (95% over 22bp) GAATGATCTGTCTCTTATACACATCTGACGCGCTATCTGTCGTATGCCGTC 1017 0.13627830253783163 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGCTATCTGTCGTA 985 0.1319902930184505 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGCTATCTGTCGTATGCC 832 0.11148824750390947 No Hit CCTGTCTCTTATACACATCTGACGCGCTATCTGTCGTATGCCGTCTTCTGC 768 0.1029122284651472 TruSeq Adapter, Index 13 (95% over 21bp) >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 1.3400029748066042E-4 0.0 0.0 0.15356434091283683 0.0 2 1.3400029748066042E-4 0.0 0.0 0.7698317090263941 0.0 3 1.3400029748066042E-4 0.0 0.0 1.0322042914935272 0.0 4 1.3400029748066042E-4 0.0 0.0 1.5580214588076386 0.0 5 1.3400029748066042E-4 0.0 0.0 3.173663045531961 0.0 6 1.3400029748066042E-4 0.0 0.0 4.001248882772519 0.0 7 1.3400029748066042E-4 0.0 0.0 4.744548532897743 0.0 8 1.3400029748066042E-4 0.0 0.0 5.7969868693108495 0.0 9 1.3400029748066042E-4 0.0 0.0 6.229003828388499 0.0 10 1.3400029748066042E-4 0.0 0.0 7.6960390852067695 0.0 11 1.3400029748066042E-4 0.0 0.0 8.696217305602419 0.0 12 1.3400029748066042E-4 0.0 0.0 10.241240735554433 0.0 13 1.3400029748066042E-4 0.0 0.0 10.716003789528413 0.0 14 1.3400029748066042E-4 0.0 0.0 10.955998322316276 0.0 15 1.3400029748066042E-4 0.0 0.0 11.375285253133262 0.0 16 1.3400029748066042E-4 0.0 0.0 11.905256429669274 0.0 17 1.3400029748066042E-4 0.0 0.0 12.530233817119074 0.0 18 1.3400029748066042E-4 0.0 0.0 13.248877412507856 0.0 19 1.3400029748066042E-4 0.0 0.0 13.871710795197965 0.0 20 1.3400029748066042E-4 0.0 0.0 14.355049868210708 0.0 21 1.3400029748066042E-4 0.0 0.0 14.85875698644051 0.0 22 1.3400029748066042E-4 0.0 0.0 15.424104241511417 0.0 23 1.3400029748066042E-4 0.0 0.0 15.931429367773196 0.0 24 1.3400029748066042E-4 0.0 0.0 16.332224257537852 0.0 25 1.3400029748066042E-4 0.0 0.0 16.7074250904837 0.0 26 1.3400029748066042E-4 0.0 0.0 17.07244190082102 0.0 27 1.3400029748066042E-4 0.0 0.0 17.450188739419 0.0 28 1.3400029748066042E-4 0.0 0.0 17.825657572959813 0.0 29 1.3400029748066042E-4 0.0 0.0 18.198044399658567 0.0 30 1.3400029748066042E-4 0.0 0.0 18.625103347729432 0.0 31 1.3400029748066042E-4 0.0 0.0 19.025094235709204 0.0 32 1.3400029748066042E-4 0.0 0.0 19.412623096023275 0.0 33 2.6800059496132083E-4 0.0 0.0 19.818375996794714 0.0 34 2.6800059496132083E-4 0.0 0.0 20.214614876445026 0.0 35 2.6800059496132083E-4 0.0 0.0 20.601875736164136 0.0 36 2.6800059496132083E-4 0.0 0.0 20.993290605105145 0.0 37 2.6800059496132083E-4 0.0 0.0 21.374789452032584 0.0 38 2.6800059496132083E-4 0.0 0.0 21.7391362608825 0.0 39 4.020008924419812E-4 0.0 0.0 22.121841110487264 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTATACG 30 2.1644737E-6 45.000004 1 GTAACGG 65 0.0 45.000004 2 TTCTACG 20 7.0316956E-4 45.0 1 TCGGACA 25 3.889486E-5 45.0 13 ACGGCTA 40 6.8102963E-9 45.0 30 CGTAAGC 20 7.0316956E-4 45.0 43 TTTGCGC 20 7.0316956E-4 45.0 19 AGAATCG 20 7.0316956E-4 45.0 26 CGTTTTT 3795 0.0 42.806324 1 CGAACAC 70 0.0 41.785713 34 CACGACG 55 6.002665E-11 40.90909 26 CGATGAA 820 0.0 40.60976 19 CCGATGA 830 0.0 39.849396 18 CGAATAT 85 0.0 39.705883 14 CCCGTCG 35 6.2453437E-6 38.571426 40 TAATACG 65 9.094947E-12 38.076927 4 GCGACTA 30 1.1395379E-4 37.500004 33 CGACGGT 60 1.546141E-10 37.500004 28 TATTGCG 30 1.1395379E-4 37.500004 1 GTCGTTT 30 1.1395379E-4 37.500004 9 >>END_MODULE