SRR3551270_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551270_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	724825
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	10137	1.3985444762528887	No Hit
GCTGTCTCTTATACACATCTGACGCGTGCATACTCGTATGCCGTCTTCTGC	1968	0.27151381367916394	TruSeq Adapter, Index 20 (95% over 21bp)
GAATCTGTCTCTTATACACATCTGACGCGTGCATACTCGTATGCCGTCTTC	1546	0.21329286379470908	No Hit
CTGTCTCTTATACACATCTGACGCGTGCATACTCGTATGCCGTCTTCTGCT	1522	0.20998171972545096	TruSeq Adapter, Index 23 (95% over 22bp)
CCTGTCTCTTATACACATCTGACGCGTGCATACTCGTATGCCGTCTTCTGC	957	0.13203186976166661	TruSeq Adapter, Index 20 (95% over 21bp)
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGTGCATACTCGTATGCC	896	0.12361604525230228	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGTGCATACTCGTATGCCG	783	0.1080260752595454	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGTGCATACTCGTATGC	749	0.10333528782809644	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	738	0.10181768012968648	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACGGTCT	50	2.1827873E-11	45.000004	30
TCCGATT	20	7.03156E-4	45.0	20
TAGTTCG	20	7.03156E-4	45.0	1
ACGTACG	20	7.03156E-4	45.0	1
GACTAGT	20	7.03156E-4	45.0	13
ATGCACG	30	2.1643882E-6	44.999996	1
GACACGA	100	0.0	42.750004	25
CGTTTTT	4325	0.0	42.658962	1
ACGACCA	95	0.0	42.63158	28
CGGTCTA	55	6.002665E-11	40.909092	31
ACGTAAG	50	1.0804797E-9	40.500004	1
AACACGT	100	0.0	40.500004	41
ATTAGCG	40	3.4558616E-7	39.375	1
GATATCA	40	3.4558616E-7	39.375	9
TATAGCG	40	3.4558616E-7	39.375	1
CACGACC	110	0.0	38.86364	27
AGACACG	110	0.0	38.86364	24
ACGGGTA	105	0.0	38.57143	5
CGAACGT	35	6.2450963E-6	38.571426	38
TACGCGG	35	6.2450963E-6	38.571426	2