SRR3551262_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551262_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	680717
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	11195	1.6445894549423623	No Hit
GAATCTGTCTCTTATACACATCTGACGCAGGCTAAGTCGTATGCCGTCTTC	6305	0.9262292553293071	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAGGCTAAGTCGTATGCCG	4195	0.6162619708336945	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCAGGCTAAGTCGTATGC	3837	0.5636703652178512	No Hit
GCTGTCTCTTATACACATCTGACGCAGGCTAAGTCGTATGCCGTCTTCTGC	2460	0.3613836587010461	No Hit
GAACTGTCTCTTATACACATCTGACGCAGGCTAAGTCGTATGCCGTCTTCT	1745	0.2563473513956607	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAGGCTAAGTCGTATGCC	1685	0.24753311581758647	No Hit
GAATGCTGTCTCTTATACACATCTGACGCAGGCTAAGTCGTATGCCGTCTT	1573	0.23107987607184777	No Hit
CTGTCTCTTATACACATCTGACGCAGGCTAAGTCGTATGCCGTCTTCTGCT	1362	0.20008314762228652	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCAGGCTAAGT	1193	0.17525638407737723	No Hit
GAATGACTGTCTCTTATACACATCTGACGCAGGCTAAGTCGTATGCCGTCT	1156	0.1698209388042314	No Hit
CCTGTCTCTTATACACATCTGACGCAGGCTAAGTCGTATGCCGTCTTCTGC	1063	0.15615887365821626	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCAGGCTAAGTCGTATGCCGTC	1014	0.1489605812694556	No Hit
CGCTGTCTCTTATACACATCTGACGCAGGCTAAGTCGTATGCCGTCTTCTG	870	0.12780641588207728	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCAGGCTAAGTCGTA	811	0.11913908423030423	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	764	0.11223459969414602	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCAGGCTAAGTCGTATGCCGTCTT	750	0.11017794472592869	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AACGTTG	20	7.031258E-4	45.0	1
ACGTTAG	20	7.031258E-4	45.0	1
ATTCGGT	20	7.031258E-4	45.0	45
CGTAAGG	70	0.0	45.0	2
TTACCGG	40	6.8084773E-9	45.0	2
TAATGCG	40	6.8084773E-9	45.0	1
CGACGGT	50	2.1827873E-11	44.999996	28
ATTACCG	25	3.8891252E-5	44.999996	1
CGGTCTA	55	1.8189894E-12	44.999996	31
CACGTAT	25	3.8891252E-5	44.999996	45
CGTTTTT	5645	0.0	43.365807	1
ACGGTCT	60	3.6379788E-12	41.249996	30
GTACACG	50	1.0804797E-9	40.499996	1
TGAACCG	50	1.0804797E-9	40.499996	1
AACGGGC	40	3.4554432E-7	39.375	4
CGGATAG	80	0.0	39.375	2
TTACGAG	40	3.4554432E-7	39.375	1
GTACGGG	235	0.0	39.255318	3
CGTTATT	265	0.0	39.056602	1
TCGGCGT	105	0.0	38.571426	4