SRR3551261_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551261_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	824934
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	8866	1.074752646878417	No Hit
GAATCTGTCTCTTATACACATCTGACGCGACATGAGTCGTATGCCGTCTTC	6888	0.8349758889802094	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGACATGAGTCGTATGCCG	4618	0.5598023599463714	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGACATGAGTCGTATGC	4465	0.5412554216458529	No Hit
GCTGTCTCTTATACACATCTGACGCGACATGAGTCGTATGCCGTCTTCTGC	3101	0.3759088605876349	No Hit
GAACTGTCTCTTATACACATCTGACGCGACATGAGTCGTATGCCGTCTTCT	2119	0.2568690343712346	No Hit
CTGTCTCTTATACACATCTGACGCGACATGAGTCGTATGCCGTCTTCTGCT	1353	0.16401312104968396	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGACATGAGTCGTATGCC	1211	0.1467996227576994	No Hit
GAATGACTGTCTCTTATACACATCTGACGCGACATGAGTCGTATGCCGTCT	1206	0.14619351366291122	No Hit
CCTGTCTCTTATACACATCTGACGCGACATGAGTCGTATGCCGTCTTCTGC	1200	0.1454661827491654	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCGACATGAGTCGTATGCCGTC	1049	0.12716168808656209	No Hit
GAATGCTGTCTCTTATACACATCTGACGCGACATGAGTCGTATGCCGTCTT	974	0.11807005166473925	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGACATGAGT	955	0.11576683710454412	No Hit
GCACAAGAGTGAGGAGAGCTAAAAGGACATGTAAGAAACCAATCAAGATCA	874	0.10594786976897545	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GATCGTC	20	7.032127E-4	45.0	23
ATATGCG	25	3.8898455E-5	45.0	1
ACGATAG	25	3.8898455E-5	45.0	1
GTTAACG	20	7.032127E-4	45.0	1
AATTGCG	30	2.1647538E-6	44.999996	1
CGTTTTT	4390	0.0	43.05239	1
TACGGGA	190	0.0	40.263157	4
TATTACG	45	1.9272193E-8	40.000004	1
TCTAGCG	40	3.4566438E-7	39.375	1
TGCGTAG	40	3.4566438E-7	39.375	1
CGAACAC	75	0.0	39.000004	34
TGCAACG	35	6.246146E-6	38.571426	1
CGCGCAA	65	9.094947E-12	38.076927	18
CCTCGAC	30	1.13964285E-4	37.499996	26
ATCGTCA	30	1.13964285E-4	37.499996	24
GGCGAAC	120	0.0	37.499996	32
TATCGAG	30	1.13964285E-4	37.499996	1
CTAGCGA	30	1.13964285E-4	37.499996	17
TTACACG	410	0.0	37.317074	34
CGTTATT	195	0.0	36.923077	1