SRR3551251_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551251_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	544724
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACCTGTCTCTTATACACATCTGACGCAGTTGTGGTCGTATGCCG	9676	1.7763124077514485	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCAGTTGTGGTCGTATGC	9541	1.7515292147950154	No Hit
GAATCTGTCTCTTATACACATCTGACGCAGTTGTGGTCGTATGCCGTCTTC	8930	1.6393623192662705	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5023	0.9221183571863917	No Hit
GCTGTCTCTTATACACATCTGACGCAGTTGTGGTCGTATGCCGTCTTCTGC	3438	0.63114531395716	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCAGTTGTGGT	2889	0.5303603292676659	No Hit
GAATGACTGTCTCTTATACACATCTGACGCAGTTGTGGTCGTATGCCGTCT	1946	0.3572451369868043	No Hit
GAACTGTCTCTTATACACATCTGACGCAGTTGTGGTCGTATGCCGTCTTCT	1486	0.2727987017278475	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCAGTTGTGGTCGTA	1421	0.2608660532673427	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCAGTTGTGGTCGTATGCCGTC	1236	0.22690389995667531	No Hit
CCTGTCTCTTATACACATCTGACGCAGTTGTGGTCGTATGCCGTCTTCTGC	1230	0.22580242471416717	No Hit
GAATGATACGGCGACCACCGATGAATGATACGGCGAGCTCCGGTCGAATGC	872	0.1600810685778486	No Hit
GAATGCTGTCTCTTATACACATCTGACGCAGTTGTGGTCGTATGCCGTCTT	749	0.13750082610643188	No Hit
CTGTCTCTTATACACATCTGACGCAGTTGTGGTCGTATGCCGTCTTCTGCT	744	0.1365829300710084	Illumina Single End Adapter 2 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTCCGAT	45	3.8380676E-10	45.000004	38
CCGCGTA	45	3.8380676E-10	45.000004	40
CCGATCG	40	6.8030204E-9	45.0	40
GCGAACC	40	6.8030204E-9	45.0	33
TCGATAG	25	3.888095E-5	45.0	1
ACGGGCC	25	3.888095E-5	45.0	5
TACGCGG	20	7.0300145E-4	45.0	2
TACGATG	20	7.0300145E-4	45.0	1
CGATCGA	40	6.8030204E-9	45.0	41
TCGAATA	20	7.0300145E-4	45.0	44
GGTCGAA	330	0.0	44.31818	42
CGGTCGA	325	0.0	44.307693	41
GATGAAT	2225	0.0	43.280903	20
GTCGAAT	335	0.0	42.985077	43
ATGAATG	2215	0.0	42.9684	21
CGATGAA	2130	0.0	42.887325	19
CCGATGA	2095	0.0	42.74463	18
CGTTTTT	2465	0.0	42.5355	1
ACAACGA	75	0.0	42.0	13
CGTAAGC	75	0.0	42.0	43