SRR3551245_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551245_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	641848
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	14270	2.2232678141865367	No Hit
GAATCTGTCTCTTATACACATCTGACGCTGGACTGGTCGTATGCCGTCTTC	3771	0.58752227941818	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTGGACTGGTCGTATGCCG	2540	0.39573232291757554	No Hit
GCTGTCTCTTATACACATCTGACGCTGGACTGGTCGTATGCCGTCTTCTGC	2183	0.34011167753112886	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTGGACTGGTCGTATGC	2067	0.322038862783712	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCTGGACTGGTCGTATGCCGTCTT	1791	0.2790380276950306	No Hit
CGTTCTGTCTCTTATACACATCTGACGCTGGACTGGTCGTATGCCGTCTTC	1374	0.21406937468060974	No Hit
CCTGTCTCTTATACACATCTGACGCTGGACTGGTCGTATGCCGTCTTCTGC	1269	0.19771036133165487	No Hit
GAACTGTCTCTTATACACATCTGACGCTGGACTGGTCGTATGCCGTCTTCT	1254	0.19537335942466127	No Hit
CGCTGTCTCTTATACACATCTGACGCTGGACTGGTCGTATGCCGTCTTCTG	1234	0.1922573568820032	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTGGACTGGTCGTATGCC	1176	0.1832209495082948	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCTGGACTGGTCGTATGCCGTCT	1034	0.16109733145542246	No Hit
CTGTCTCTTATACACATCTGACGCTGGACTGGTCGTATGCCGTCTTCTGCT	1002	0.15611172738716955	Illumina Single End Adapter 2 (95% over 21bp)
GAATGCTGTCTCTTATACACATCTGACGCTGGACTGGTCGTATGCCGTCTT	995	0.15502112649723923	No Hit
CGTCTGTCTCTTATACACATCTGACGCTGGACTGGTCGTATGCCGTCTTCT	725	0.1129550921713552	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	665	0.10360708454338098	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AACGTAG	30	2.1639971E-6	45.000004	1
CGAACAC	30	2.1639971E-6	45.000004	34
TGTTACG	35	1.2108103E-7	45.0	1
CGACGGT	50	2.1827873E-11	44.999996	28
CGGTCTA	50	2.1827873E-11	44.999996	31
TAATGCG	25	3.888875E-5	44.999996	1
CGTTTTT	5900	0.0	44.046608	1
ACCGGTC	60	3.6379788E-12	41.250004	39
CGAATAT	105	0.0	40.714287	14
CGAATGC	50	1.0804797E-9	40.499996	45
CGTTATT	195	0.0	40.384617	1
CGTTTCT	230	0.0	40.1087	1
TAACGCC	45	1.925946E-8	40.0	12
ACCGTCC	40	3.455043E-7	39.375	27
ACGGCCA	35	6.2439776E-6	38.571426	30
ACGGGTA	65	9.094947E-12	38.07692	5
CGTTCTG	160	0.0	37.96875	1
AGTATAG	95	0.0	37.894737	1
GTTTTTT	6980	0.0	37.84384	2
TGATCGG	30	1.1393601E-4	37.500004	2