SRR3551241_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551241_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	800831
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	7465	0.9321567222048098	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGGCAGACTTCGTATGC	6468	0.8076610420925263	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGGCAGACTTCGTATGCCG	6372	0.7956734941579434	No Hit
GAATCTGTCTCTTATACACATCTGACGCGGCAGACTTCGTATGCCGTCTTC	5740	0.7167554702552723	No Hit
GCTGTCTCTTATACACATCTGACGCGGCAGACTTCGTATGCCGTCTTCTGC	4087	0.5103448792566722	No Hit
CTGTCTCTTATACACATCTGACGCGGCAGACTTCGTATGCCGTCTTCTGCT	1729	0.21590073311347838	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGGCAGACTT	1509	0.18842926909672578	No Hit
GAATGACTGTCTCTTATACACATCTGACGCGGCAGACTTCGTATGCCGTCT	1390	0.1735697044694823	No Hit
GAACTGTCTCTTATACACATCTGACGCGGCAGACTTCGTATGCCGTCTTCT	1258	0.15708682605943075	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCGGCAGACTTCGTATGCCGTC	1143	0.14272674259612828	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGGCAGACTTCGTA	1135	0.14172778026824637	No Hit
CCTGTCTCTTATACACATCTGACGCGGCAGACTTCGTATGCCGTCTTCTGC	1095	0.1367329686288368	No Hit
AGCTACCATTACATTTATTATTTTACTTCTACTCACAATTCTAGAATTTGC	854	0.10663922850139416	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTGTGCG	65	0.0	45.000004	1
GTTAACG	35	1.2113196E-7	45.000004	1
GTCACGC	20	7.032003E-4	45.000004	37
ACTACCG	20	7.032003E-4	45.000004	10
CGCACGG	35	1.2113196E-7	45.000004	2
ATACGGA	20	7.032003E-4	45.000004	28
TACACGT	20	7.032003E-4	45.000004	41
GATTACG	25	3.8897422E-5	45.0	1
CGTTTTT	3730	0.0	42.345844	1
CGATGAA	835	0.0	40.958084	19
CTGCGCG	50	1.0804797E-9	40.5	1
TTGTCGG	45	1.9270374E-8	40.0	2
ATAACGG	85	0.0	39.705883	2
CGGGTCA	40	3.4564619E-7	39.375004	6
CGAATAT	160	0.0	39.375004	14
TATAGCG	40	3.4564619E-7	39.375004	1
TACGGCT	970	0.0	39.20103	7
AATGACG	75	0.0	39.000004	1
CTTGCGG	150	0.0	39.000004	2
CCGATGA	855	0.0	38.68421	18