SRR3551239_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551239_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	858858
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	9523	1.108797961944815	No Hit
GAATCTGTCTCTTATACACATCTGACGCTTGTACAGTCGTATGCCGTCTTC	6759	0.7869752624997381	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTTGTACAGTCGTATGCCG	5709	0.6647198954891262	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTTGTACAGTCGTATGC	5256	0.6119754371502624	No Hit
GCTGTCTCTTATACACATCTGACGCTTGTACAGTCGTATGCCGTCTTCTGC	3991	0.46468682832319197	No Hit
GAACTGTCTCTTATACACATCTGACGCTTGTACAGTCGTATGCCGTCTTCT	2088	0.24311352982681655	No Hit
CTGTCTCTTATACACATCTGACGCTTGTACAGTCGTATGCCGTCTTCTGCT	2046	0.23822331514639206	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTTGTACAGT	1507	0.17546556008094472	No Hit
CCTGTCTCTTATACACATCTGACGCTTGTACAGTCGTATGCCGTCTTCTGC	1463	0.17034247803478572	No Hit
GAATGACTGTCTCTTATACACATCTGACGCTTGTACAGTCGTATGCCGTCT	1346	0.15671973713931756	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTTGTACAGTCGTATGCC	1290	0.15019945089875159	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCTTGTACAGTCGTATGCCGTC	1150	0.1338987352973367	No Hit
TCTGTCTCTTATACACATCTGACGCTTGTACAGTCGTATGCCGTCTTCTGC	1022	0.11899522389032878	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCTTGTACAGTCGTA	1006	0.1171322849644528	No Hit
GAATGCTGTCTCTTATACACATCTGACGCTTGTACAGTCGTATGCCGTCTT	917	0.1067696871892676	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CACGCTT	20	7.0322887E-4	45.000004	41
AACGGAT	20	7.0322887E-4	45.000004	4
ACGTAAG	35	1.211447E-7	45.000004	1
ACGATAG	25	3.8899794E-5	45.0	1
ACGTCGG	25	3.8899794E-5	45.0	2
TGTAGCG	45	3.8380676E-10	45.0	1
ACGGCCA	30	2.1648593E-6	44.999996	30
GGTGCGA	30	2.1648593E-6	44.999996	42
CGTTTTT	4505	0.0	43.251945	1
CGTAAGG	90	0.0	42.5	2
ACGACCA	90	0.0	42.5	28
TTTAGCG	40	3.456862E-7	39.375004	1
CGGCGAT	120	0.0	39.374996	31
CACGACC	105	0.0	38.57143	27
CGGGACG	70	0.0	38.57143	6
CGAGACA	105	0.0	38.57143	22
AACACGT	100	0.0	38.25	41
GCGATCG	30	1.13968184E-4	37.499996	9
GTATACG	30	1.13968184E-4	37.499996	1
CGTCGCA	30	1.13968184E-4	37.499996	9