##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3551239_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 858858 Sequences flagged as poor quality 0 Sequence length 51 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.623880781223438 33.0 31.0 34.0 30.0 34.0 2 31.775452985243195 33.0 31.0 34.0 30.0 34.0 3 31.74304832696441 33.0 31.0 34.0 30.0 34.0 4 35.47141785952975 37.0 35.0 37.0 33.0 37.0 5 34.25022297050269 37.0 35.0 37.0 32.0 37.0 6 34.75874358741492 37.0 35.0 37.0 32.0 37.0 7 35.49889388001276 37.0 35.0 37.0 33.0 37.0 8 35.33916083916084 37.0 35.0 37.0 33.0 37.0 9 37.240511237014736 39.0 37.0 39.0 34.0 39.0 10 36.743956509690776 39.0 35.0 39.0 32.0 39.0 11 36.8945122476591 39.0 37.0 39.0 33.0 39.0 12 36.91838697433103 39.0 37.0 39.0 33.0 39.0 13 37.027854429952335 39.0 37.0 39.0 33.0 39.0 14 38.078914092900106 40.0 37.0 41.0 33.0 41.0 15 38.17809812565057 40.0 37.0 41.0 33.0 41.0 16 38.248316951114155 40.0 37.0 41.0 34.0 41.0 17 38.15329658686302 40.0 37.0 41.0 34.0 41.0 18 38.018674798395075 39.0 37.0 41.0 33.0 41.0 19 37.91426289328387 39.0 37.0 41.0 34.0 41.0 20 37.94264709649325 40.0 36.0 41.0 34.0 41.0 21 37.84445740739447 39.0 36.0 41.0 33.0 41.0 22 37.97599370326643 40.0 36.0 41.0 34.0 41.0 23 38.031555856730684 40.0 36.0 41.0 34.0 41.0 24 37.91097131306922 40.0 36.0 41.0 34.0 41.0 25 37.63009018953075 39.0 35.0 41.0 33.0 41.0 26 37.77225571631166 40.0 36.0 41.0 33.0 41.0 27 37.83574467490551 40.0 36.0 41.0 34.0 41.0 28 37.726852401677576 40.0 36.0 41.0 33.0 41.0 29 37.7459475256678 40.0 36.0 41.0 33.0 41.0 30 37.459938662735865 40.0 36.0 41.0 33.0 41.0 31 37.34757783009531 39.0 35.0 41.0 33.0 41.0 32 37.27036716197556 40.0 36.0 41.0 33.0 41.0 33 37.158316042931425 40.0 36.0 41.0 32.0 41.0 34 36.956528320164686 40.0 36.0 41.0 31.0 41.0 35 36.87034760111683 40.0 36.0 41.0 31.0 41.0 36 36.689095286997386 40.0 35.0 41.0 31.0 41.0 37 36.67774300291783 40.0 35.0 41.0 31.0 41.0 38 36.47130026151005 39.0 35.0 41.0 30.0 41.0 39 36.42082509565027 39.0 35.0 41.0 30.0 41.0 40 36.33602760875488 39.0 35.0 41.0 30.0 41.0 41 36.22637618791465 39.0 35.0 41.0 30.0 41.0 42 36.324289929185035 39.0 35.0 41.0 30.0 41.0 43 36.268919891297514 39.0 35.0 41.0 30.0 41.0 44 36.35897785198485 39.0 35.0 41.0 30.0 41.0 45 36.35304555584276 39.0 35.0 41.0 30.0 41.0 46 36.28333787424697 39.0 35.0 41.0 30.0 41.0 47 36.23198479841837 39.0 35.0 41.0 30.0 41.0 48 36.18254472799927 39.0 35.0 41.0 30.0 41.0 49 36.17886193061018 39.0 35.0 41.0 30.0 41.0 50 36.05059509255314 39.0 35.0 41.0 29.0 41.0 51 35.15195876384688 38.0 34.0 40.0 26.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 5.0 8 19.0 9 28.0 10 37.0 11 27.0 12 40.0 13 35.0 14 38.0 15 83.0 16 96.0 17 157.0 18 264.0 19 517.0 20 1004.0 21 1765.0 22 2635.0 23 3718.0 24 5137.0 25 7994.0 26 10429.0 27 11285.0 28 10998.0 29 11067.0 30 12318.0 31 15330.0 32 20155.0 33 28152.0 34 48698.0 35 61537.0 36 67714.0 37 102616.0 38 181514.0 39 253382.0 40 64.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.21640830032438 19.64387593758223 23.644187979852315 14.49552778224107 2 34.8852778922709 25.92326088829585 23.363582804142244 15.827878415291002 3 29.462379112728765 25.73067957683342 29.5237396635998 15.28320164683801 4 26.35092180546726 24.310188645852982 32.42445200487158 16.914437543808173 5 25.25283574234623 30.5287952141099 26.506127904729304 17.712241138814566 6 24.222048347922474 34.63203463203463 27.071180567684067 14.07473645235883 7 73.93410785019177 5.675327003998333 15.812392735469658 4.578172410340243 8 74.46877132191817 7.24671598797473 12.851018445424039 5.433494244683056 9 68.53053706200559 7.43673575841408 14.918880653146388 9.113846526433939 10 35.688670304054924 29.54865647173339 20.952008364595777 13.81066485961591 11 26.956144089011218 23.961004030934102 30.95086731450368 18.131984565550997 12 24.17955005367593 21.037936422551805 34.128691820999514 20.653821702772753 13 23.26088829585333 23.631147407371184 35.57572963167369 17.532234665101797 14 19.049481986544926 28.325287765847207 32.15630523322831 20.46892501437956 15 17.588705001292414 25.287882280889274 37.34854888701042 19.774863830807888 16 20.49139671517294 25.210919616514023 32.865968530304194 21.431715138008844 17 20.734975979731225 25.317107135288953 31.331489023796717 22.616427861183105 18 21.080784017846955 24.4807639912535 32.76758206828137 21.670869922618174 19 21.423215479159534 26.387132680838977 30.3684660328017 21.821185807199793 20 22.52269874647497 25.85852376062166 32.25119868476512 19.36757880813825 21 21.92981843331494 28.488411355544223 30.869130869130867 18.71263934200997 22 20.37449729757422 23.961004030934102 31.886877691073494 23.77762098041818 23 19.80956106830233 26.984204606582228 31.201432600033996 22.004801725081446 24 20.221969173018124 25.628916538007445 31.989805066728145 22.159309222246286 25 19.349997322025295 28.68797868797869 29.97550235312473 21.986521636871288 26 18.593993419168246 26.547811163195778 32.968779472275976 21.889415945360003 27 21.123398745776367 26.227036366896506 31.449785645589838 21.199779241737286 28 19.183613589207997 25.638347666319696 33.72757778352184 21.450460960950473 29 20.002258813447625 23.626839361105095 34.19936706649994 22.17153475894735 30 20.642178334486026 26.371879868383363 32.7742187882048 20.211723008925805 31 22.513500485528457 25.150490535105916 29.78548258268538 22.550526396680244 32 22.255017709563162 26.682175633224585 30.974037617394263 20.08876903981799 33 21.490630581539673 26.316224567972817 29.679411497593318 22.513733352894192 34 20.521669472718422 25.266342049558833 30.998837991844987 23.213150485877758 35 19.980252847385714 26.28490390728153 31.461196146510833 22.273647098821925 36 23.205232995442785 26.896064308651724 30.048972007013962 19.84973068889153 37 20.99206155150211 26.256610522344786 32.18226994450771 20.569057981645393 38 21.03537488152873 28.65910313462761 28.393052169275947 21.912469814567718 39 21.891395317968744 25.790875790875788 29.852548384016913 22.465180507138548 40 20.814500185129557 27.053482647888245 30.455907728635 21.6761094383472 41 20.719257432544147 25.66815468913371 29.028896511413993 24.583691366908152 42 21.50681486345822 26.09057609057609 30.621942160403698 21.780666885561992 43 23.159940292807427 24.621183012791402 30.27392188231349 21.94495481208768 44 21.47048755440364 24.44781325900207 30.508768620656735 23.572930565937558 45 20.383695558520735 24.66880438908411 30.173788915047655 24.7737111373475 46 22.895752266381635 25.980895561315144 29.21868341448761 21.90466875781561 47 19.41578235284529 24.846715056505268 33.154258329083504 22.58324426156594 48 20.67128675520284 25.128251701678273 30.589922897615207 23.61053864550368 49 21.25706461370797 23.28976384920441 32.38614532320826 23.06702621387936 50 20.308130098339888 23.204883694394184 31.94544383355572 24.541542373710207 51 20.211257274194335 22.774894103565433 29.864773920717973 27.149074701522252 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 302.0 1 652.5 2 1003.0 3 7980.0 4 14957.0 5 9915.0 6 4873.0 7 4669.5 8 4466.0 9 4438.0 10 4410.0 11 4278.0 12 4146.0 13 4049.0 14 3952.0 15 3879.0 16 3806.0 17 3556.5 18 3307.0 19 3259.0 20 3211.0 21 3615.5 22 4020.0 23 4188.0 24 4356.0 25 4652.5 26 6230.0 27 7511.0 28 8561.5 29 9612.0 30 11540.5 31 13469.0 32 15234.5 33 17000.0 34 19309.0 35 21618.0 36 24890.0 37 28162.0 38 31144.5 39 34127.0 40 37925.0 41 41723.0 42 48532.5 43 55342.0 44 77299.5 45 99257.0 46 96049.0 47 92841.0 48 89059.0 49 85277.0 50 74517.0 51 63757.0 52 56398.0 53 49039.0 54 43662.0 55 38285.0 56 35121.5 57 31958.0 58 29842.0 59 27726.0 60 25966.5 61 24207.0 62 21232.0 63 18257.0 64 15924.0 65 13591.0 66 10857.0 67 8123.0 68 6842.0 69 5561.0 70 4746.0 71 3931.0 72 3447.5 73 2964.0 74 2423.5 75 1385.0 76 887.0 77 739.5 78 592.0 79 404.0 80 216.0 81 153.5 82 91.0 83 82.0 84 73.0 85 41.0 86 9.0 87 8.5 88 8.0 89 5.5 90 3.0 91 1.5 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 858858.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 34.11809919356024 #Duplication Level Percentage of deduplicated Percentage of total 1 74.87887431309548 25.54724861316322 2 9.921464128369282 6.770029945541058 3 3.4986901862679805 3.581059764678802 4 1.7934476732430273 2.447561024566617 5 1.209687350925361 2.0636116516033294 6 0.8745474731581054 1.7902738463211423 7 0.6685878088744286 1.5967661627947993 8 0.5812482153308619 1.5864867413390569 9 0.4987600955202552 1.5315071771474684 >10 5.911439136109498 41.75735074923945 >50 0.10813358444370223 2.4652511622101856 >100 0.047396208148869814 2.940788852230752 >500 0.002808664186599645 0.6329326013273244 >1k 0.0035108302332495555 2.025408280818268 >5k 0.0014043320932998224 3.2637234270184723 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 9523 1.108797961944815 No Hit GAATCTGTCTCTTATACACATCTGACGCTTGTACAGTCGTATGCCGTCTTC 6759 0.7869752624997381 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCTTGTACAGTCGTATGCCG 5709 0.6647198954891262 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCTTGTACAGTCGTATGC 5256 0.6119754371502624 No Hit GCTGTCTCTTATACACATCTGACGCTTGTACAGTCGTATGCCGTCTTCTGC 3991 0.46468682832319197 No Hit GAACTGTCTCTTATACACATCTGACGCTTGTACAGTCGTATGCCGTCTTCT 2088 0.24311352982681655 No Hit CTGTCTCTTATACACATCTGACGCTTGTACAGTCGTATGCCGTCTTCTGCT 2046 0.23822331514639206 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTTGTACAGT 1507 0.17546556008094472 No Hit CCTGTCTCTTATACACATCTGACGCTTGTACAGTCGTATGCCGTCTTCTGC 1463 0.17034247803478572 No Hit GAATGACTGTCTCTTATACACATCTGACGCTTGTACAGTCGTATGCCGTCT 1346 0.15671973713931756 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTTGTACAGTCGTATGCC 1290 0.15019945089875159 No Hit GAATGATCTGTCTCTTATACACATCTGACGCTTGTACAGTCGTATGCCGTC 1150 0.1338987352973367 No Hit TCTGTCTCTTATACACATCTGACGCTTGTACAGTCGTATGCCGTCTTCTGC 1022 0.11899522389032878 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCTTGTACAGTCGTA 1006 0.1171322849644528 No Hit GAATGCTGTCTCTTATACACATCTGACGCTTGTACAGTCGTATGCCGTCTT 917 0.1067696871892676 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.24590793821563053 0.0 2 0.0 0.0 0.0 1.1098458650906204 0.0 3 0.0 0.0 0.0 1.5224868371721518 0.0 4 0.0 0.0 0.0 2.264635131767999 0.0 5 0.0 0.0 0.0 4.222816810229397 0.0 6 0.0 0.0 0.0 5.317293429181541 0.0 7 0.0 0.0 0.0 6.37090182544728 0.0 8 0.0 0.0 0.0 7.919469807581696 0.0 9 0.0 0.0 0.0 8.599442515526432 0.0 10 0.0 0.0 0.0 10.515358767107019 0.0 11 0.0 0.0 0.0 11.993367937423882 0.0 12 0.0 0.0 0.0 13.86690232844079 0.0 13 0.0 0.0 0.0 14.470028805693142 0.0 14 0.0 0.0 0.0 14.747024537234328 0.0 15 0.0 0.0 0.0 15.239771883128526 0.0 16 0.0 0.0 0.0 15.95968134429673 0.0 17 0.0 0.0 0.0 16.820708429100037 0.0 18 0.0 0.0 0.0 17.843461899405956 0.0 19 0.0 0.0 0.0 18.62007456413051 0.0 20 0.0 0.0 0.0 19.244857706396168 0.0 21 0.0 0.0 0.0 19.922967475415028 0.0 22 0.0 0.0 0.0 20.644041273411904 0.0 23 0.0 0.0 0.0 21.340663998006654 0.0 24 0.0 0.0 0.0 21.90711386515582 0.0 25 0.0 0.0 0.0 22.411504579336746 0.0 26 0.0 0.0 0.0 22.905183394693886 0.0 27 0.0 0.0 0.0 23.422731115038808 0.0 28 0.0 0.0 0.0 23.91990294088196 0.0 29 0.0 0.0 0.0 24.444087381150318 0.0 30 0.0 0.0 0.0 25.04930966469428 0.0 31 0.0 0.0 0.0 25.57419270705984 0.0 32 0.0 0.0 0.0 26.095000570525045 0.0 33 0.0 0.0 0.0 26.59985701943744 0.0 34 0.0 0.0 0.0 27.088179885382683 0.0 35 0.0 0.0 0.0 27.58232443547129 0.0 36 0.0 0.0 0.0 28.077284021339967 0.0 37 0.0 0.0 0.0 28.55792226421597 0.0 38 0.0 0.0 0.0 29.055909125839197 0.0 39 0.0 0.0 0.0 29.572641810404047 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CACGCTT 20 7.0322887E-4 45.000004 41 AACGGAT 20 7.0322887E-4 45.000004 4 ACGTAAG 35 1.211447E-7 45.000004 1 ACGATAG 25 3.8899794E-5 45.0 1 ACGTCGG 25 3.8899794E-5 45.0 2 TGTAGCG 45 3.8380676E-10 45.0 1 ACGGCCA 30 2.1648593E-6 44.999996 30 GGTGCGA 30 2.1648593E-6 44.999996 42 CGTTTTT 4505 0.0 43.251945 1 CGTAAGG 90 0.0 42.5 2 ACGACCA 90 0.0 42.5 28 TTTAGCG 40 3.456862E-7 39.375004 1 CGGCGAT 120 0.0 39.374996 31 CACGACC 105 0.0 38.57143 27 CGGGACG 70 0.0 38.57143 6 CGAGACA 105 0.0 38.57143 22 AACACGT 100 0.0 38.25 41 GCGATCG 30 1.13968184E-4 37.499996 9 GTATACG 30 1.13968184E-4 37.499996 1 CGTCGCA 30 1.13968184E-4 37.499996 9 >>END_MODULE