SRR3551238_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551238_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	920781
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATCTGTCTCTTATACACATCTGACGCCTTGAAGGTCGTATGCCGTCTTC	14998	1.628834652322322	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCTTGAAGGTCGTATGC	9674	1.0506298457505097	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCTTGAAGGTCGTATGCCG	9629	1.045742690172799	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	9317	1.0118584115006717	No Hit
GAACTGTCTCTTATACACATCTGACGCCTTGAAGGTCGTATGCCGTCTTCT	4051	0.439952605451242	No Hit
GCTGTCTCTTATACACATCTGACGCCTTGAAGGTCGTATGCCGTCTTCTGC	3880	0.42138141425594144	Illumina Single End Adapter 1 (95% over 21bp)
GAATGCTGTCTCTTATACACATCTGACGCCTTGAAGGTCGTATGCCGTCTT	3381	0.3671882890719943	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCTTGAAGGT	2394	0.2599966767342071	No Hit
GAATGACTGTCTCTTATACACATCTGACGCCTTGAAGGTCGTATGCCGTCT	2247	0.2440319685136857	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCCTTGAAGGTCGTATGCCGTC	1898	0.20612936192210743	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCCTTGAAGGTCGTA	1615	0.17539458351117151	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	1080	0.11729173386505587	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CAAATCG	25	3.8901984E-5	45.000004	44
CGTATTA	20	7.0325565E-4	45.0	25
ATATGCG	35	1.2115743E-7	45.0	1
TACGATC	20	7.0325565E-4	45.0	11
CGGTCGA	220	0.0	42.954544	41
TACGGGT	90	0.0	42.500004	4
GATGAAT	2680	0.0	42.481342	20
GTCGAAT	350	0.0	41.785713	43
CGATGAA	2615	0.0	41.644356	19
CGTTTTT	4325	0.0	41.56647	1
CCGATGA	2585	0.0	41.257256	18
ATACGGA	60	3.6379788E-12	41.250004	28
ATGAATG	2720	0.0	41.19485	21
ATAGCGG	165	0.0	40.909092	2
TATAGCG	50	1.0804797E-9	40.500004	1
CGCACGG	50	1.0804797E-9	40.500004	2
TACGGGA	195	0.0	40.384617	4
GGTCGAA	370	0.0	40.135136	42
TCGAATG	385	0.0	39.740257	44
CGAATGC	375	0.0	39.600002	45