##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3551238_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 920781 Sequences flagged as poor quality 0 Sequence length 51 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.51462399854037 31.0 31.0 34.0 30.0 34.0 2 31.672107699876516 31.0 31.0 34.0 30.0 34.0 3 31.660248202341272 31.0 31.0 34.0 30.0 34.0 4 35.39669910651936 37.0 35.0 37.0 33.0 37.0 5 34.25670056180569 37.0 35.0 37.0 32.0 37.0 6 34.663889676263956 37.0 35.0 37.0 32.0 37.0 7 35.339888638014905 37.0 35.0 37.0 32.0 37.0 8 35.00725905508476 37.0 35.0 37.0 32.0 37.0 9 36.73466872144408 39.0 37.0 39.0 32.0 39.0 10 36.46091633081048 38.0 35.0 39.0 32.0 39.0 11 36.657118250702396 39.0 35.0 39.0 32.0 39.0 12 36.61256151028312 39.0 35.0 39.0 32.0 39.0 13 36.642620775189755 39.0 35.0 39.0 32.0 39.0 14 37.69567030596852 40.0 36.0 41.0 33.0 41.0 15 37.769352321561804 40.0 36.0 41.0 33.0 41.0 16 37.893292759081696 40.0 37.0 41.0 33.0 41.0 17 37.694895963318096 40.0 36.0 41.0 33.0 41.0 18 37.61606831591877 39.0 36.0 41.0 33.0 41.0 19 37.5275271753001 39.0 36.0 41.0 33.0 41.0 20 37.39120811571915 39.0 35.0 41.0 32.0 41.0 21 37.33125031902266 39.0 35.0 41.0 32.0 41.0 22 37.41376939793501 39.0 35.0 41.0 32.0 41.0 23 37.37861120070896 39.0 35.0 41.0 32.0 41.0 24 37.36243580178132 39.0 35.0 41.0 32.0 41.0 25 37.135092926548225 39.0 35.0 41.0 32.0 41.0 26 37.145479761202715 39.0 35.0 41.0 32.0 41.0 27 37.084456564590276 39.0 35.0 41.0 32.0 41.0 28 36.911200383152995 39.0 35.0 41.0 31.0 41.0 29 36.95728083007794 39.0 35.0 41.0 31.0 41.0 30 36.637187344221914 39.0 35.0 41.0 31.0 41.0 31 36.59516540849562 39.0 35.0 41.0 30.0 41.0 32 36.48739711179966 39.0 35.0 41.0 30.0 41.0 33 36.34104417880039 39.0 35.0 41.0 30.0 41.0 34 36.10741533545979 39.0 35.0 41.0 29.0 41.0 35 36.023800447663454 39.0 35.0 41.0 29.0 41.0 36 35.762838286194004 39.0 35.0 41.0 27.0 41.0 37 35.67734890272497 39.0 35.0 41.0 27.0 41.0 38 35.52687664059098 38.0 35.0 41.0 26.0 41.0 39 35.39752775089842 38.0 35.0 40.0 26.0 41.0 40 35.351848050730844 38.0 35.0 40.0 26.0 41.0 41 35.15669741230543 38.0 35.0 40.0 25.0 41.0 42 35.20043419662222 38.0 35.0 40.0 25.0 41.0 43 35.148116653145536 38.0 35.0 40.0 25.0 41.0 44 35.29848791406425 38.0 35.0 40.0 26.0 41.0 45 35.32547152906066 38.0 35.0 40.0 26.0 41.0 46 35.25093263218941 38.0 35.0 40.0 26.0 41.0 47 35.09585015329378 38.0 35.0 40.0 26.0 41.0 48 35.119198810574936 38.0 35.0 40.0 26.0 41.0 49 35.099242925299286 37.0 35.0 40.0 26.0 41.0 50 34.92643527614058 37.0 34.0 40.0 25.0 41.0 51 34.114676562613695 36.0 33.0 40.0 23.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 6 1.0 7 7.0 8 24.0 9 41.0 10 68.0 11 69.0 12 53.0 13 55.0 14 84.0 15 133.0 16 177.0 17 266.0 18 499.0 19 1217.0 20 2714.0 21 4366.0 22 5753.0 23 7411.0 24 8927.0 25 10939.0 26 12941.0 27 13921.0 28 13609.0 29 14089.0 30 16088.0 31 20383.0 32 26112.0 33 36606.0 34 61831.0 35 75207.0 36 78720.0 37 112037.0 38 176347.0 39 220029.0 40 57.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 47.00596558790853 17.892093776913295 20.57774867205123 14.524191963126952 2 32.27075710728175 30.81612240044049 21.242076020248028 15.671044472029722 3 29.054031306032595 29.988781262862723 25.96936730883891 14.987820122265772 4 26.197543172589356 22.14272449149146 34.04468597853344 17.61504635738574 5 29.44250587273195 28.790776525579915 23.682721515756732 18.0839960859314 6 24.077712289893036 37.4688443831921 24.928728981158386 13.524714345756482 7 70.45095413567395 6.1604225108902115 18.845740735310567 4.542882618125265 8 70.53837991878633 12.319433176835751 11.92541983381499 5.216767070562924 9 64.50578367711758 7.831721115009975 13.654821287580868 14.007673920291577 10 41.80755250162634 22.653920964919998 20.31992406446267 15.218602468990996 11 33.43954751455558 22.494708296543912 25.013113867466856 19.052630321433654 12 26.005749467028533 19.474989166805138 29.902550117780454 24.61671124838588 13 27.017825085443768 21.890330056767027 32.27933678040707 18.812508077382134 14 20.3116702017092 29.922533153920423 28.813257441237383 20.952539203132993 15 18.69087220522578 22.727228298585658 35.30915603167311 23.27274346451545 16 21.574837013361485 22.993958389671377 29.131574174532272 26.299630422434866 17 21.27650331620657 26.249890038999503 28.628631563857205 23.844975080936727 18 22.518383850231487 22.049542725143112 29.231054941403006 26.201018483222395 19 23.122870693465654 23.811633819551012 26.792798721954515 26.27269676502882 20 27.466683174392177 23.471487791342348 29.188265179233714 19.87356385503176 21 23.449549892971294 28.44259384153235 28.239288169499588 19.868568095996768 22 22.170092562726644 21.610350343892847 31.086327802159254 25.133229291221255 23 24.856616285522833 24.938394688856526 28.376237129132768 21.828751896487873 24 23.022086685107535 25.1880740371489 28.437489479040075 23.352349798703493 25 21.728076491587032 29.425889543767735 26.305277802213556 22.540756162431673 26 20.759333652627497 23.032512617006653 30.63616647172346 25.57198725864239 27 25.846971212481577 23.2872963277913 27.301497315865554 23.56423514386157 28 20.09913323580743 26.39856817201919 30.54689442983728 22.955404162336105 29 22.910659537935732 22.330499869132833 30.49976052937669 24.259080063554745 30 21.059187798184368 26.56646911697787 30.816556814269624 21.557786270568137 31 23.909051120733377 23.477026567663756 27.332557904648336 25.28136440695453 32 28.310314830562316 24.50767337727429 26.0245378651384 21.15747392702499 33 25.451003007229733 25.228691730172535 25.72598696106892 23.594318301528812 34 22.847995343083753 26.03485519358023 26.705264335384854 24.411885127951162 35 26.83634870832478 23.398289061133973 27.265658174962343 22.499704055578906 36 24.10529756804278 27.607650461944804 26.177125722620254 22.10992624739216 37 23.983010075142733 25.105644013071508 28.804677768112068 22.106668143673687 38 23.052169842774774 25.939066944257107 26.254234177290797 24.754529035677322 39 25.790280207780135 26.10599045810024 25.355323361363887 22.748405972755737 40 24.171328470070517 24.49160006559649 27.634366912436292 23.702704551896705 41 22.31714164388709 26.252713728888843 25.931899116076462 25.498245511147598 42 24.863675510246193 23.828141545057946 28.514706537167907 22.793476407527958 43 25.83502483218051 23.110924313164585 26.328518942072005 24.725531912582905 44 23.355933712793814 22.577789941364994 29.070864841911376 24.995411503929816 45 23.180973543111772 22.711589400736983 27.431712861147222 26.675724195004026 46 25.881724318811965 25.822969848422154 25.8876975089625 22.40760832380338 47 21.534110716880562 25.427653263914003 30.771486379497404 22.26674963970803 48 22.591148166610736 24.900492082264947 28.014913426754028 24.49344632437029 49 23.444445530479015 22.346355973896074 31.169735257352183 23.039463238272727 50 22.80672602931642 22.718865832374906 29.75246013981609 24.72194799849258 51 22.29683279737527 22.920542452548435 27.761650164371332 27.02097458570496 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 385.0 1 995.0 2 1605.0 3 8469.0 4 15333.0 5 10101.0 6 4869.0 7 4527.0 8 4185.0 9 3970.5 10 3756.0 11 3711.0 12 3666.0 13 3649.0 14 3632.0 15 3312.0 16 2992.0 17 2900.5 18 2809.0 19 2768.0 20 2727.0 21 3347.5 22 3968.0 23 3736.0 24 3504.0 25 4302.5 26 5861.0 27 6621.0 28 7418.0 29 8215.0 30 9462.0 31 10709.0 32 12139.0 33 13569.0 34 15231.0 35 16893.0 36 18021.5 37 19150.0 38 21119.5 39 23089.0 40 26664.0 41 30239.0 42 33751.0 43 37263.0 44 43216.0 45 49169.0 46 79208.0 47 109247.0 48 92073.5 49 74900.0 50 73291.0 51 71682.0 52 66613.5 53 61545.0 54 58368.0 55 55191.0 56 53705.5 57 52220.0 58 49041.0 59 45862.0 60 44644.5 61 43427.0 62 39213.0 63 34999.0 64 31805.0 65 28611.0 66 25006.0 67 21401.0 68 18842.5 69 16284.0 70 13918.5 71 11553.0 72 9818.5 73 8084.0 74 6728.5 75 4405.0 76 3437.0 77 2716.0 78 1995.0 79 1429.0 80 863.0 81 629.0 82 395.0 83 284.5 84 174.0 85 120.0 86 66.0 87 41.0 88 16.0 89 9.5 90 3.0 91 2.5 92 2.0 93 1.5 94 1.0 95 0.5 96 0.0 97 0.5 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 920781.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 28.069803823954725 #Duplication Level Percentage of deduplicated Percentage of total 1 75.71075375903212 21.251860053797742 2 8.182035137212093 4.593362423644959 3 2.8629110377012355 2.41084053581125 4 1.5267482037094777 1.7142209026680122 5 1.0501544187165102 1.4738814259115824 6 0.801189792589639 1.3493544182247683 7 0.6809097020381921 1.3379101230627661 8 0.5790903055457803 1.3003961018419246 9 0.5288010523504105 1.3359007621239152 >10 7.809912052529763 48.27188397904306 >50 0.19027141337288223 3.3720178847661617 >100 0.06806780623470346 3.5237525165182157 >500 0.004378630810419521 0.8953238708456879 >1k 0.003184458771214197 2.2956850431043936 >5k 0.001194172039205324 3.197824682840832 >10k+ 3.980573464017746E-4 1.675785275794787 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GAATCTGTCTCTTATACACATCTGACGCCTTGAAGGTCGTATGCCGTCTTC 14998 1.628834652322322 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCCTTGAAGGTCGTATGC 9674 1.0506298457505097 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCCTTGAAGGTCGTATGCCG 9629 1.045742690172799 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 9317 1.0118584115006717 No Hit GAACTGTCTCTTATACACATCTGACGCCTTGAAGGTCGTATGCCGTCTTCT 4051 0.439952605451242 No Hit GCTGTCTCTTATACACATCTGACGCCTTGAAGGTCGTATGCCGTCTTCTGC 3880 0.42138141425594144 Illumina Single End Adapter 1 (95% over 21bp) GAATGCTGTCTCTTATACACATCTGACGCCTTGAAGGTCGTATGCCGTCTT 3381 0.3671882890719943 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCTTGAAGGT 2394 0.2599966767342071 No Hit GAATGACTGTCTCTTATACACATCTGACGCCTTGAAGGTCGTATGCCGTCT 2247 0.2440319685136857 No Hit GAATGATCTGTCTCTTATACACATCTGACGCCTTGAAGGTCGTATGCCGTC 1898 0.20612936192210743 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCCTTGAAGGTCGTA 1615 0.17539458351117151 No Hit GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT 1080 0.11729173386505587 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 2.1720691456491827E-4 0.0 0.0 0.09676568043867108 0.0 2 2.1720691456491827E-4 0.0 0.0 0.7027729720747931 0.0 3 2.1720691456491827E-4 0.0 0.0 0.9173734036649323 0.0 4 2.1720691456491827E-4 0.0 0.0 1.5856104763239034 0.0 5 2.1720691456491827E-4 0.0 0.0 3.827511645005707 0.0 6 2.1720691456491827E-4 0.0 0.0 4.719471839666544 0.0 7 2.1720691456491827E-4 0.0 0.0 5.395854171621699 0.0 8 2.1720691456491827E-4 0.0 0.0 6.255776346384211 0.0 9 2.1720691456491827E-4 0.0 0.0 6.570834975960625 0.0 10 2.1720691456491827E-4 0.0 0.0 8.277864117526317 0.0 11 2.1720691456491827E-4 0.0 0.0 9.02082036879562 0.0 12 2.1720691456491827E-4 0.0 0.0 10.796486895363827 0.0 13 2.1720691456491827E-4 0.0 0.0 11.220474792594548 0.0 14 2.1720691456491827E-4 0.0 0.0 11.425626723401113 0.0 15 2.1720691456491827E-4 0.0 0.0 11.832563877838487 0.0 16 2.1720691456491827E-4 0.0 0.0 12.26991000031495 0.0 17 2.1720691456491827E-4 0.0 0.0 12.718333675434224 0.0 18 2.1720691456491827E-4 0.0 0.0 13.232462442209386 0.0 19 2.1720691456491827E-4 0.0 0.0 13.817292059675427 0.0 20 2.1720691456491827E-4 0.0 0.0 14.16145641580354 0.0 21 3.258103718473774E-4 0.0 0.0 14.503014288956875 0.0 22 3.258103718473774E-4 0.0 0.0 14.88171454450081 0.0 23 3.258103718473774E-4 0.0 0.0 15.206656088689927 0.0 24 4.3441382912983654E-4 0.0 0.0 15.50314352707104 0.0 25 4.3441382912983654E-4 0.0 0.0 15.773674739161647 0.0 26 4.3441382912983654E-4 0.0 0.0 16.106218525360536 0.0 27 4.3441382912983654E-4 0.0 0.0 16.43007403497683 0.0 28 5.430172864122956E-4 0.0 0.0 16.69191697048484 0.0 29 5.430172864122956E-4 0.0 0.0 16.95169644030448 0.0 30 5.430172864122956E-4 0.0 0.0 17.283154191930546 0.0 31 5.430172864122956E-4 0.0 0.0 17.570301732985367 0.0 32 5.430172864122956E-4 0.0 0.0 17.875477447949077 0.0 33 5.430172864122956E-4 0.0 0.0 18.184345680460392 0.0 34 5.430172864122956E-4 0.0 0.0 18.487457929735736 0.0 35 6.516207436947548E-4 0.0017376553165193462 0.0 18.80664349068888 0.0 36 6.516207436947548E-4 0.0017376553165193462 0.0 19.081084427241656 0.0 37 6.516207436947548E-4 0.0017376553165193462 0.0 19.363236209261487 0.0 38 6.516207436947548E-4 0.0017376553165193462 0.0 19.65266442291924 0.0 39 6.516207436947548E-4 0.0017376553165193462 0.0 19.956862706767406 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CAAATCG 25 3.8901984E-5 45.000004 44 CGTATTA 20 7.0325565E-4 45.0 25 ATATGCG 35 1.2115743E-7 45.0 1 TACGATC 20 7.0325565E-4 45.0 11 CGGTCGA 220 0.0 42.954544 41 TACGGGT 90 0.0 42.500004 4 GATGAAT 2680 0.0 42.481342 20 GTCGAAT 350 0.0 41.785713 43 CGATGAA 2615 0.0 41.644356 19 CGTTTTT 4325 0.0 41.56647 1 CCGATGA 2585 0.0 41.257256 18 ATACGGA 60 3.6379788E-12 41.250004 28 ATGAATG 2720 0.0 41.19485 21 ATAGCGG 165 0.0 40.909092 2 TATAGCG 50 1.0804797E-9 40.500004 1 CGCACGG 50 1.0804797E-9 40.500004 2 TACGGGA 195 0.0 40.384617 4 GGTCGAA 370 0.0 40.135136 42 TCGAATG 385 0.0 39.740257 44 CGAATGC 375 0.0 39.600002 45 >>END_MODULE