SRR3551229_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551229_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	742004
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCGCAAGAACTCGTATGCCGTCTTCTGC	1906	0.2568719306095385	Illumina Single End Adapter 1 (95% over 24bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	988	0.1331529210085121	No Hit
AGCTACCATTACATTTATTATTTTACTTCTACTCACAATTCTAGAATTTGC	949	0.12789688465291293	No Hit
CTGTCTCTTATACACATCTGACGCGCAAGAACTCGTATGCCGTCTTCTGCT	893	0.12034975552692438	Illumina Single End Adapter 1 (96% over 25bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGCGCAT	25	3.8894636E-5	45.000004	36
TAACGGC	20	7.0316694E-4	45.0	24
TACGATG	20	7.0316694E-4	45.0	40
CGCGTGA	20	7.0316694E-4	45.0	40
GCGTAAT	20	7.0316694E-4	45.0	1
AACGGGC	130	0.0	41.53846	4
TACGAGG	65	0.0	41.53846	2
TCGGCGT	45	1.9266736E-8	40.0	4
CGATATG	40	3.456007E-7	39.375	10
AGCGATC	75	0.0	39.000004	14
TATTGCG	35	6.2452964E-6	38.571426	1
ATGCGAG	35	6.2452964E-6	38.571426	1
GCGTAAG	35	6.2452964E-6	38.571426	1
TAACGGG	205	0.0	38.414635	3
TAGCGAG	65	9.094947E-12	38.07692	1
GTGTTCG	30	1.1395322E-4	37.499996	1
GTCATCG	30	1.1395322E-4	37.499996	43
CTATGCG	30	1.1395322E-4	37.499996	1
ACCGCAA	30	1.1395322E-4	37.499996	33
CGCATGT	30	1.1395322E-4	37.499996	38