SRR3551228_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551228_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	722655
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCAGTCTCCTTCGTATGCCGTCTTCTGC	2360	0.3265735378569304	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2328	0.32214542208937874	No Hit
CCTGTCTCTTATACACATCTGACGCAGTCTCCTTCGTATGCCGTCTTCTGC	2076	0.28727401041990996	No Hit
CTGTCTCTTATACACATCTGACGCAGTCTCCTTCGTATGCCGTCTTCTGCT	1969	0.2724674983221593	No Hit
TCTGTCTCTTATACACATCTGACGCAGTCTCCTTCGTATGCCGTCTTCTGC	1357	0.18777978426773495	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAGTCTCCTTCGTATGCC	1043	0.1443288982986349	No Hit
CGCTGTCTCTTATACACATCTGACGCAGTCTCCTTCGTATGCCGTCTTCTG	938	0.1297991434363562	No Hit
ACTGTCTCTTATACACATCTGACGCAGTCTCCTTCGTATGCCGTCTTCTGC	807	0.11167154451294187	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACGTTCG	30	2.164379E-6	45.000004	1
AAGCGCG	30	2.164379E-6	45.000004	1
TATTGCG	35	1.2110831E-7	45.000004	1
AGTGCCG	30	2.164379E-6	45.000004	1
GACGGCG	30	2.164379E-6	45.000004	9
GCGGACG	30	2.164379E-6	45.000004	1
GACTGCG	30	2.164379E-6	45.000004	1
CAGCGCG	25	3.8893628E-5	45.0	1
GAAGCGC	25	3.8893628E-5	45.0	20
TTCAGCG	20	7.031546E-4	45.0	1
CGCGGAG	20	7.031546E-4	45.0	10
TCCGAGT	20	7.031546E-4	45.0	15
TTTCGCG	25	3.8893628E-5	45.0	1
CGCATGG	45	3.8380676E-10	45.0	2
TAGCGGA	25	3.8893628E-5	45.0	3
GACCGGA	20	7.031546E-4	45.0	41
GCGCCGA	25	3.8893628E-5	45.0	9
CACGATA	20	7.031546E-4	45.0	10
CGATTCG	20	7.031546E-4	45.0	10
CACTGCG	20	7.031546E-4	45.0	1