##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3551228_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 722655 Sequences flagged as poor quality 0 Sequence length 51 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.32221184382589 33.0 31.0 34.0 30.0 34.0 2 32.439839204046194 34.0 31.0 34.0 30.0 34.0 3 32.45095100705039 34.0 31.0 34.0 30.0 34.0 4 35.957101244715666 37.0 35.0 37.0 35.0 37.0 5 36.018451404888914 37.0 35.0 37.0 35.0 37.0 6 36.06759933855021 37.0 35.0 37.0 35.0 37.0 7 36.27468709135064 37.0 37.0 37.0 35.0 37.0 8 36.087160539953366 37.0 37.0 37.0 35.0 37.0 9 37.95497713293342 39.0 38.0 39.0 35.0 39.0 10 37.660434093723836 39.0 37.0 39.0 35.0 39.0 11 37.59679653499941 39.0 37.0 39.0 35.0 39.0 12 37.53369173395327 39.0 37.0 39.0 35.0 39.0 13 37.527366447336554 39.0 37.0 39.0 35.0 39.0 14 38.81040192069521 40.0 38.0 41.0 35.0 41.0 15 38.88001743570584 40.0 38.0 41.0 35.0 41.0 16 38.9310556212854 40.0 38.0 41.0 35.0 41.0 17 38.96153904698646 40.0 38.0 41.0 35.0 41.0 18 38.96144356574022 40.0 38.0 41.0 35.0 41.0 19 38.92393050625817 40.0 38.0 41.0 35.0 41.0 20 38.85021898416257 40.0 38.0 41.0 35.0 41.0 21 38.817091143076574 40.0 38.0 41.0 35.0 41.0 22 38.81507081525763 40.0 38.0 41.0 35.0 41.0 23 38.7990036739523 40.0 38.0 41.0 35.0 41.0 24 38.7581930520096 40.0 38.0 41.0 35.0 41.0 25 38.69904726321689 40.0 38.0 41.0 35.0 41.0 26 38.69359929703662 40.0 38.0 41.0 35.0 41.0 27 38.660497747887995 40.0 38.0 41.0 35.0 41.0 28 38.61295500619244 40.0 38.0 41.0 35.0 41.0 29 38.5982273699068 40.0 38.0 41.0 35.0 41.0 30 38.52308224533145 40.0 38.0 41.0 35.0 41.0 31 38.44668479426559 40.0 38.0 41.0 35.0 41.0 32 38.36111699220236 40.0 38.0 41.0 34.0 41.0 33 38.319837266745544 40.0 38.0 41.0 34.0 41.0 34 38.25489203008351 40.0 38.0 41.0 34.0 41.0 35 38.19817478603206 40.0 38.0 41.0 34.0 41.0 36 38.15454124028755 40.0 38.0 41.0 34.0 41.0 37 38.08854709370308 40.0 38.0 41.0 34.0 41.0 38 38.04481945049851 40.0 37.0 41.0 34.0 41.0 39 38.0288920715971 40.0 37.0 41.0 34.0 41.0 40 37.9917304938041 40.0 37.0 41.0 34.0 41.0 41 37.942527208695715 40.0 37.0 41.0 34.0 41.0 42 37.9320394932575 40.0 37.0 41.0 34.0 41.0 43 37.860595996706586 40.0 37.0 41.0 34.0 41.0 44 37.805685977402774 40.0 37.0 41.0 33.0 41.0 45 37.76136745750047 40.0 37.0 41.0 33.0 41.0 46 37.65332558413074 40.0 37.0 41.0 33.0 41.0 47 37.621383647798744 40.0 36.0 41.0 33.0 41.0 48 37.59288457147601 40.0 36.0 41.0 33.0 41.0 49 37.53415253475033 40.0 36.0 41.0 33.0 41.0 50 37.493579924030136 40.0 36.0 41.0 33.0 41.0 51 36.74789491527769 39.0 35.0 41.0 31.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 2.0 10 5.0 11 8.0 12 4.0 13 10.0 14 16.0 15 22.0 16 18.0 17 30.0 18 81.0 19 144.0 20 247.0 21 404.0 22 581.0 23 983.0 24 1667.0 25 2719.0 26 3973.0 27 4860.0 28 5200.0 29 5627.0 30 6878.0 31 8594.0 32 11389.0 33 16006.0 34 29873.0 35 47485.0 36 38660.0 37 61035.0 38 127171.0 39 348250.0 40 713.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 38.64983982674997 23.522842850322768 26.897067065197085 10.930250257730176 2 33.402107506348116 23.86934290913368 25.46470999301188 17.26383959150632 3 30.893441545412404 23.3299430571988 28.762134075042724 17.01448132234607 4 28.64077602728826 25.347918439642708 27.43771232469159 18.573593208377442 5 24.73960603607531 29.681798368516098 26.549459977444283 19.029135617964315 6 24.87217275186638 34.089987615113714 25.584822633206716 15.453016999813189 7 82.08398198310397 5.136199154506645 8.251378596979194 4.528440265410189 8 83.84734070891365 3.5826224131847146 8.044225806228422 4.525811071673205 9 77.77182749721513 6.841715618102691 10.002698383045852 5.383758501636327 10 36.3174682248099 31.876621624426594 18.558925074897424 13.246985075866077 11 24.96543994022044 25.733441268655167 29.49720129245629 19.803917498668106 12 24.554040309691345 22.373608430025392 32.764320457202956 20.308030803080307 13 22.766603704395596 24.647861012516344 34.08860382893636 18.496931454151706 14 19.253585735932084 28.6043824508237 31.67666452179809 20.465367291446128 15 18.387889103375745 28.45258110716732 34.59852903529347 18.561000754163466 16 20.81449654399402 26.633317419792295 32.49697296773702 20.05521306847666 17 20.536078765109213 27.49292539316825 29.27980848399305 22.691187357729483 18 21.329265001971894 27.151130207360357 31.6128719790218 19.906732811645945 19 21.308923345164704 29.403242211013552 29.875943569199688 19.411890874622053 20 22.348423521597443 28.543910994873073 30.468065674491978 18.639599809037506 21 21.9187579135272 27.770928036199848 31.744885180341935 18.56542886993102 22 20.377773626419245 25.981277373020323 30.225764714836263 23.41518428572417 23 18.983055538258228 27.94320941528115 30.3458773550311 22.72785769142952 24 20.35701683375885 26.64895420359646 31.11595436273187 21.87807459991282 25 19.48163369796099 29.143643924140843 28.28223702873432 23.092485349163848 26 18.138945970068704 31.336253122167562 29.414727636285644 21.110073271478093 27 20.820170067321197 29.8279261888453 29.361451868457284 19.990451875376216 28 18.42677349495956 27.916917477911312 31.635150936477295 22.02115809065183 29 19.518995924749706 26.42574949318831 31.37043264074835 22.68482194131363 30 21.396240252956115 26.901910316817844 29.88646034414762 21.81538908607842 31 20.616061606160617 28.070240986362787 28.205160138655376 23.108537268821223 32 19.590122534266005 28.762964346749143 27.638499699026507 24.008413419958348 33 20.195390608243212 26.976911527630747 29.77963205125544 23.048065812870593 34 18.12081837114529 26.83922480298344 29.803018037652823 25.236938788218445 35 18.390933432965937 27.427195549743654 28.077990188956004 26.103880828334407 36 20.500515460351064 26.773910095412056 30.511654939078813 22.213919505158064 37 19.353633476555203 26.57409137140129 31.481689049408086 22.59058610263542 38 18.579958624793296 25.96536383198068 29.94679342148051 25.507884121745505 39 19.1778926320305 24.5777030533242 31.481965806643558 24.762438508001743 40 20.141976461797125 24.52664134337962 30.60907348596495 24.722308708858307 41 17.801578900028368 26.285987089274965 29.78004718710865 26.13238682358802 42 20.019649763718512 25.76858943756011 30.575447481855107 23.63631331686628 43 21.061225619417286 25.039887636562398 30.758384014502077 23.140502729518232 44 19.469733136835696 25.837778746428103 29.822667801371335 24.869820315364873 45 19.832008358068514 24.648691284222764 29.26278791401153 26.2565124436972 46 21.043513156347082 25.781181891774086 29.2561457403602 23.919159211518636 47 18.427603766665975 25.40949692453522 31.899730853588505 24.2631684552103 48 18.854501802381495 23.712559935238804 31.969335298309705 25.46360296406999 49 19.838788910337573 22.04606624184431 32.85136060775889 25.263784240059227 50 18.717922106676077 22.561941728764072 31.610657921138024 27.109478243421826 51 18.412658875950488 22.73643716572915 29.0734859649487 29.777417993371664 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 240.0 1 418.0 2 596.0 3 2334.0 4 4072.0 5 2821.5 6 1571.0 7 1533.5 8 1496.0 9 1507.0 10 1518.0 11 1505.5 12 1493.0 13 1494.5 14 1496.0 15 1518.0 16 1540.0 17 1656.5 18 1773.0 19 1849.0 20 1925.0 21 2172.0 22 2419.0 23 2913.0 24 3407.0 25 3562.5 26 5293.0 27 6868.0 28 8665.0 29 10462.0 30 11861.5 31 13261.0 32 15166.5 33 17072.0 34 20177.5 35 23283.0 36 25467.0 37 27651.0 38 29223.0 39 30795.0 40 36160.0 41 41525.0 42 45475.5 43 49426.0 44 53207.5 45 56989.0 46 64732.0 47 72475.0 48 79954.5 49 87434.0 50 84582.5 51 81731.0 52 68670.0 53 55609.0 54 45790.5 55 35972.0 56 30205.5 57 24439.0 58 22169.0 59 19899.0 60 18129.5 61 16360.0 62 13760.0 63 11160.0 64 8841.5 65 6523.0 66 4854.0 67 3185.0 68 2365.0 69 1545.0 70 1136.5 71 728.0 72 633.0 73 538.0 74 392.5 75 195.0 76 143.0 77 88.0 78 33.0 79 29.5 80 26.0 81 14.0 82 2.0 83 2.0 84 2.0 85 4.0 86 6.0 87 3.0 88 0.0 89 1.0 90 2.0 91 1.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 722655.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 33.78976939029281 #Duplication Level Percentage of deduplicated Percentage of total 1 70.57950799177809 23.848652987225105 2 12.290089236384452 8.30558562167101 3 4.690677162753863 4.754906988412981 4 2.401621834236371 3.2460099176615604 5 1.4851619505716007 2.509163990852592 6 1.00399951782048 2.035494730507152 7 0.7622186170521019 1.8028633906624902 8 0.5872663888892132 1.5874876680989227 9 0.49234209953954633 1.4972513404116472 >10 5.39235090690389 40.27875285298634 >50 0.26175136053251347 5.394736209047088 >100 0.04928546164846254 2.8603339371616894 >500 0.0012424906297931735 0.3207537249363761 >1k 0.002484981259586347 1.5580066403650417 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GCTGTCTCTTATACACATCTGACGCAGTCTCCTTCGTATGCCGTCTTCTGC 2360 0.3265735378569304 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2328 0.32214542208937874 No Hit CCTGTCTCTTATACACATCTGACGCAGTCTCCTTCGTATGCCGTCTTCTGC 2076 0.28727401041990996 No Hit CTGTCTCTTATACACATCTGACGCAGTCTCCTTCGTATGCCGTCTTCTGCT 1969 0.2724674983221593 No Hit TCTGTCTCTTATACACATCTGACGCAGTCTCCTTCGTATGCCGTCTTCTGC 1357 0.18777978426773495 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAGTCTCCTTCGTATGCC 1043 0.1443288982986349 No Hit CGCTGTCTCTTATACACATCTGACGCAGTCTCCTTCGTATGCCGTCTTCTG 938 0.1297991434363562 No Hit ACTGTCTCTTATACACATCTGACGCAGTCTCCTTCGTATGCCGTCTTCTGC 807 0.11167154451294187 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 4.151358532079623E-4 0.0 0.0 0.28021670091537454 0.0 2 4.151358532079623E-4 0.0 0.0 1.2293556399665124 0.0 3 4.151358532079623E-4 0.0 0.0 1.7603143962194963 0.0 4 4.151358532079623E-4 0.0 0.0 2.3848170980620074 0.0 5 4.151358532079623E-4 0.0 0.0 4.0499270052791445 0.0 6 4.151358532079623E-4 0.0 0.0 5.076142834409227 0.0 7 4.151358532079623E-4 0.0 0.0 6.006739038683743 0.0 8 4.151358532079623E-4 0.0 0.0 7.4273339283613895 0.0 9 4.151358532079623E-4 0.0 0.0 8.038137147048038 0.0 10 4.151358532079623E-4 0.0 0.0 9.500107243428745 0.0 11 4.151358532079623E-4 0.0 0.0 11.763566293736291 0.0 12 4.151358532079623E-4 0.0 0.0 13.407919408293031 0.0 13 4.151358532079623E-4 0.0 0.0 14.094277352263529 0.0 14 4.151358532079623E-4 0.0 0.0 14.348894008897744 0.0 15 4.151358532079623E-4 0.0 0.0 14.810525077665 0.0 16 4.151358532079623E-4 0.0 0.0 15.822626287786012 0.0 17 4.151358532079623E-4 0.0 0.0 17.134593962540908 0.0 18 4.151358532079623E-4 0.0 0.0 18.49776172585812 0.0 19 4.151358532079623E-4 0.0 0.0 19.353910233790675 0.0 20 4.151358532079623E-4 0.0 0.0 20.134227259203907 0.0 21 4.151358532079623E-4 0.0 0.0 21.1573987587438 0.0 22 4.151358532079623E-4 0.0 0.0 22.238689277732806 0.0 23 4.151358532079623E-4 0.0 0.0 23.316658709896146 0.0 24 4.151358532079623E-4 0.0 0.0 24.14803744525396 0.0 25 4.151358532079623E-4 0.0 0.0 24.84671108620296 0.0 26 4.151358532079623E-4 0.0 0.0 25.5074689858923 0.0 27 4.151358532079623E-4 0.0 0.0 26.208079927489603 0.0 28 4.151358532079623E-4 0.0 0.0 26.88032325245103 0.0 29 4.151358532079623E-4 0.0 0.0 27.600999093620054 0.0 30 4.151358532079623E-4 0.0 0.0 28.372183130262712 0.0 31 4.151358532079623E-4 0.0 0.0 29.15236177705821 0.0 32 4.151358532079623E-4 0.0 0.0 29.873037618227233 0.0 33 4.151358532079623E-4 0.0 0.0 30.517881976876932 0.0 34 4.151358532079623E-4 0.0 0.0 31.159682005936443 0.0 35 4.151358532079623E-4 0.0 0.0 31.84437940649411 0.0 36 4.151358532079623E-4 0.0 0.0 32.490884308556645 0.0 37 4.151358532079623E-4 0.0 0.0 33.175996844967514 0.0 38 4.151358532079623E-4 0.0 0.0 33.84533421895649 0.0 39 4.151358532079623E-4 0.0 0.0 34.50194076011375 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ACGTTCG 30 2.164379E-6 45.000004 1 AAGCGCG 30 2.164379E-6 45.000004 1 TATTGCG 35 1.2110831E-7 45.000004 1 AGTGCCG 30 2.164379E-6 45.000004 1 GACGGCG 30 2.164379E-6 45.000004 9 GCGGACG 30 2.164379E-6 45.000004 1 GACTGCG 30 2.164379E-6 45.000004 1 CAGCGCG 25 3.8893628E-5 45.0 1 GAAGCGC 25 3.8893628E-5 45.0 20 TTCAGCG 20 7.031546E-4 45.0 1 CGCGGAG 20 7.031546E-4 45.0 10 TCCGAGT 20 7.031546E-4 45.0 15 TTTCGCG 25 3.8893628E-5 45.0 1 CGCATGG 45 3.8380676E-10 45.0 2 TAGCGGA 25 3.8893628E-5 45.0 3 GACCGGA 20 7.031546E-4 45.0 41 GCGCCGA 25 3.8893628E-5 45.0 9 CACGATA 20 7.031546E-4 45.0 10 CGATTCG 20 7.031546E-4 45.0 10 CACTGCG 20 7.031546E-4 45.0 1 >>END_MODULE