SRR3551226_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551226_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1187169
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5838	0.4917581237380693	No Hit
GCTGTCTCTTATACACATCTGACGCCTCACAGATCGTATGCCGTCTTCTGC	3516	0.2961667631146029	Illumina Single End Adapter 2 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCCTCACAGATCGTATGCCGTCTTCTGCT	1897	0.15979190831296977	Illumina Single End Adapter 2 (95% over 22bp)
GAATCTGTCTCTTATACACATCTGACGCCTCACAGATCGTATGCCGTCTTC	1578	0.13292126057873815	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCTCACAGATCGTATGCC	1305	0.10992537709458383	No Hit
CCTGTCTCTTATACACATCTGACGCCTCACAGATCGTATGCCGTCTTCTGC	1291	0.10874610101847336	Illumina Single End Adapter 2 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACTACCG	30	2.1655615E-6	45.000004	1
AGTCGAG	30	2.1655615E-6	45.000004	1
GATACGC	20	7.0333807E-4	45.0	8
ACCGCGA	20	7.0333807E-4	45.0	40
CCCGTCG	20	7.0333807E-4	45.0	43
TGTTACG	35	1.2119744E-7	45.0	1
ACGTACG	25	3.890883E-5	45.0	1
CGTCATT	20	7.0333807E-4	45.0	15
TTCGACC	25	3.890883E-5	45.0	28
CTAGCGA	20	7.0333807E-4	45.0	14
TTAAGCG	95	0.0	42.63158	1
TCGACGG	70	0.0	41.785713	2
TTAGGCG	60	3.6379788E-12	41.250004	1
CGTTTTT	3110	0.0	41.23794	1
TTACGCG	55	6.184564E-11	40.909092	1
TACGTAG	55	6.184564E-11	40.909092	1
ACGGGCG	140	0.0	40.17857	5
TTACGGG	325	0.0	40.153847	3
CCGACGG	45	1.9283107E-8	40.0	2
GTTTACG	80	0.0	39.375	1