SRR3551222_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551222_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	536123
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGAATGATACCTGTCTCTTATACACATCTGACGCACTCACCATCGTATGC	3381	0.6306388645889096	No Hit
GCTGTCTCTTATACACATCTGACGCACTCACCATCGTATGCCGTCTTCTGC	3346	0.6241105119534136	No Hit
CCTGTCTCTTATACACATCTGACGCACTCACCATCGTATGCCGTCTTCTGC	2641	0.49261083743842365	No Hit
CTGTCTCTTATACACATCTGACGCACTCACCATCGTATGCCGTCTTCTGCT	1933	0.3605515898403911	No Hit
TCTGTCTCTTATACACATCTGACGCACTCACCATCGTATGCCGTCTTCTGC	1707	0.3183970842511886	No Hit
CTGAATCTGTCTCTTATACACATCTGACGCACTCACCATCGTATGCCGTCT	1527	0.284822699268638	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1134	0.21151862539006908	No Hit
ACTGTCTCTTATACACATCTGACGCACTCACCATCGTATGCCGTCTTCTGC	1029	0.1919335674835812	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCACTCACCATCGTATGCC	969	0.18074210582273098	No Hit
GAATCTGTCTCTTATACACATCTGACGCACTCACCATCGTATGCCGTCTTC	800	0.1492194888113362	No Hit
CTGAATGATACGGCTGTCTCTTATACACATCTGACGCACTCACCATCGTAT	651	0.12142735902022483	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCACTCACCATCGTATGC	611	0.11396638457965803	No Hit
ACCTGTCTCTTATACACATCTGACGCACTCACCATCGTATGCCGTCTTCTG	588	0.10967632427633212	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCACTCACCATCGTATGCCG	572	0.10669193450010539	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGGTCA	20	7.0299144E-4	45.000004	6
GATCGGA	20	7.0299144E-4	45.000004	9
GTCGACG	20	7.0299144E-4	45.000004	1
CCCTATA	20	7.0299144E-4	45.000004	37
ATTACCG	20	7.0299144E-4	45.000004	1
GTAGGCG	40	6.8030204E-9	45.000004	1
TCGGCGT	20	7.0299144E-4	45.000004	4
CCTCCGG	20	7.0299144E-4	45.000004	2
ACGGCGC	20	7.0299144E-4	45.000004	10
ACGGAAT	20	7.0299144E-4	45.000004	5
CGGGCCG	20	7.0299144E-4	45.000004	6
CCAAGCG	20	7.0299144E-4	45.000004	20
TAGATCG	20	7.0299144E-4	45.000004	28
GCGTCGC	20	7.0299144E-4	45.000004	14
CGCTTCT	20	7.0299144E-4	45.000004	18
CGCCAGG	40	6.8030204E-9	45.000004	2
TGCAACG	20	7.0299144E-4	45.000004	1
GCGAGAC	35	1.210301E-7	45.0	21
CGGCGCT	25	3.8880113E-5	45.0	11
TTTACGG	45	3.8380676E-10	45.0	2