SRR3551212_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551212_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	725078
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACCTGTCTCTTATACACATCTGACGCTGTTCGGATCGTATGCCG	7160	0.9874799676724435	No Hit
GAATCTGTCTCTTATACACATCTGACGCTGTTCGGATCGTATGCCGTCTTC	6415	0.8847324012037326	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTGTTCGGATCGTATGC	5985	0.8254284366647451	No Hit
GCTGTCTCTTATACACATCTGACGCTGTTCGGATCGTATGCCGTCTTCTGC	2752	0.3795453730495202	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1775	0.24480124896907643	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTGTTCGGAT	1687	0.23266462366807436	No Hit
GAATGACTGTCTCTTATACACATCTGACGCTGTTCGGATCGTATGCCGTCT	1543	0.21280469135734362	No Hit
CCTGTCTCTTATACACATCTGACGCTGTTCGGATCGTATGCCGTCTTCTGC	1457	0.20094389844954613	No Hit
CTGTCTCTTATACACATCTGACGCTGTTCGGATCGTATGCCGTCTTCTGCT	1205	0.16618901690576737	Illumina Single End Adapter 1 (95% over 21bp)
GAACTGTCTCTTATACACATCTGACGCTGTTCGGATCGTATGCCGTCTTCT	1128	0.15556946976739056	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCTGTTCGGATCGTA	1045	0.14412242544939993	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCTGTTCGGATCGTATGCCGTC	985	0.13584745365326215	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	821	0.11322919741048548	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	794	0.10950546010222348	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTGTTCGGATCGTATGCC	739	0.10192006928909716	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CCGATCG	100	0.0	45.000004	40
GTTACGT	25	3.8893748E-5	45.000004	45
CGAGTAA	20	7.031562E-4	45.0	24
TAACGGT	20	7.031562E-4	45.0	28
GTAGACG	40	6.8084773E-9	45.0	1
ACTACGC	35	1.2111013E-7	45.0	14
CGACTTA	20	7.031562E-4	45.0	11
CGATCGA	95	0.0	45.0	41
TTCGAAA	20	7.031562E-4	45.0	22
ACGACGT	20	7.031562E-4	45.0	24
CGGTTAT	30	2.16439E-6	44.999996	38
CCGATGA	690	0.0	43.369568	18
CGATGAA	750	0.0	42.3	19
TATAGCG	75	0.0	42.0	1
GCGATAT	60	3.6379788E-12	41.249996	9
GATGAAT	830	0.0	41.20482	20
TACGGGT	50	1.0804797E-9	40.500004	4
TACGGCT	685	0.0	40.401463	7
GCTACGA	140	0.0	40.17857	10
TTTCGCG	40	3.4558616E-7	39.375	1