SRR3551211_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551211_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	637219
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1429	0.22425571114483403	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTTAGACGGTCGTATGCCG	1109	0.1740374973125409	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTTAGACGGTCGTATGC	1102	0.1729389738849595	No Hit
GCTGTCTCTTATACACATCTGACGCTTAGACGGTCGTATGCCGTCTTCTGC	1029	0.16148294385446763	No Hit
GAATCTGTCTCTTATACACATCTGACGCTTAGACGGTCGTATGCCGTCTTC	909	0.1426511136673577	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	645	0.10122108725571587	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CCGTTAG	30	2.1639735E-6	45.000004	1
GGTCCGT	20	7.0309173E-4	45.0	8
CACGACA	20	7.0309173E-4	45.0	21
TATTCCG	25	3.8888422E-5	45.0	1
CGGTCGA	50	2.1827873E-11	45.0	41
CGTCACG	20	7.0309173E-4	45.0	37
ATACCGG	20	7.0309173E-4	45.0	2
ACGACAC	20	7.0309173E-4	45.0	22
GTGCCGG	20	7.0309173E-4	45.0	2
CAACGAG	55	6.002665E-11	40.909092	14
TCGTCCC	110	0.0	40.909092	38
CGTTAGG	105	0.0	40.714287	2
TAGTACG	50	1.0804797E-9	40.5	1
TACGGGA	320	0.0	40.078125	4
TGATCGG	40	3.4549885E-7	39.375	2
GAATGCG	40	3.4549885E-7	39.375	1
ATCCGGC	40	3.4549885E-7	39.375	6
AACGGGC	80	0.0	39.375	4
CTCGTCC	115	0.0	39.130432	37
CGGGTAC	35	6.2439085E-6	38.571426	6