SRR3551206_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551206_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	688248
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCCTTTCTGGTCGTATGCCGTCTTCTGC	3354	0.4873243365763504	No Hit
CCTGTCTCTTATACACATCTGACGCCTTTCTGGTCGTATGCCGTCTTCTGC	2485	0.36106171031372414	No Hit
CTGTCTCTTATACACATCTGACGCCTTTCTGGTCGTATGCCGTCTTCTGCT	1881	0.27330264672036825	Illumina Single End Adapter 2 (95% over 21bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1541	0.22390184933337984	No Hit
TCTGTCTCTTATACACATCTGACGCCTTTCTGGTCGTATGCCGTCTTCTGC	1292	0.18772303007055596	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCTTTCTGGTCGTATGCC	911	0.13236507770454836	No Hit
ACTGTCTCTTATACACATCTGACGCCTTTCTGGTCGTATGCCGTCTTCTGC	898	0.13047622368681058	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTATTCG	20	7.031311E-4	45.000004	9
TTCGTCA	20	7.031311E-4	45.000004	33
ACGTGCG	20	7.031311E-4	45.000004	1
GTCCGCA	20	7.031311E-4	45.000004	32
TCGTAAG	30	2.1642263E-6	45.000004	1
TATAGCG	20	7.031311E-4	45.000004	1
TAGTGCG	35	1.210974E-7	45.000004	1
CAATCGT	20	7.031311E-4	45.000004	42
CGATCAC	20	7.031311E-4	45.000004	10
TAAGACG	30	2.1642263E-6	45.000004	1
GTACGAG	20	7.031311E-4	45.000004	1
CTCGACG	25	3.889168E-5	45.0	1
CGGTCTA	25	3.889168E-5	45.0	31
ATCGCAT	25	3.889168E-5	45.0	10
ATCGATA	25	3.889168E-5	45.0	17
TCGATCA	75	0.0	42.0	17
TTACGCG	75	0.0	42.0	1
TACTTAT	130	0.0	41.53846	14
CGTAAGG	60	3.6379788E-12	41.250004	2
TCATGCG	50	1.0804797E-9	40.5	1