##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3551206_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 688248 Sequences flagged as poor quality 0 Sequence length 51 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.2801766223803 33.0 31.0 34.0 30.0 34.0 2 32.37007444990759 34.0 31.0 34.0 30.0 34.0 3 32.4005968778696 34.0 31.0 34.0 30.0 34.0 4 35.913422196650046 37.0 35.0 37.0 35.0 37.0 5 35.97323493856866 37.0 35.0 37.0 35.0 37.0 6 36.007173286373515 37.0 35.0 37.0 35.0 37.0 7 36.17436592623589 37.0 36.0 37.0 35.0 37.0 8 35.85312997640386 37.0 35.0 37.0 35.0 37.0 9 37.727740581883275 39.0 38.0 39.0 35.0 39.0 10 37.572822587206936 39.0 37.0 39.0 35.0 39.0 11 37.50582057630389 39.0 37.0 39.0 35.0 39.0 12 37.32501946972603 39.0 37.0 39.0 35.0 39.0 13 37.2441939533424 39.0 37.0 39.0 34.0 39.0 14 38.435569736490336 40.0 38.0 41.0 34.0 41.0 15 38.53057328172403 40.0 38.0 41.0 35.0 41.0 16 38.59502679266776 40.0 38.0 41.0 35.0 41.0 17 38.60149103230231 40.0 38.0 41.0 35.0 41.0 18 38.60242964745266 40.0 38.0 41.0 35.0 41.0 19 38.59423056805105 40.0 37.0 41.0 35.0 41.0 20 38.5234944380514 40.0 37.0 41.0 35.0 41.0 21 38.45660866431868 40.0 37.0 41.0 34.0 41.0 22 38.44721815392126 40.0 37.0 41.0 35.0 41.0 23 38.417891515848936 40.0 37.0 41.0 34.0 41.0 24 38.36761893968453 40.0 37.0 41.0 34.0 41.0 25 38.2910477037347 40.0 37.0 41.0 34.0 41.0 26 38.306694679824716 40.0 37.0 41.0 34.0 41.0 27 38.27776034220223 40.0 37.0 41.0 34.0 41.0 28 38.20038271088329 40.0 37.0 41.0 34.0 41.0 29 38.18016034917646 40.0 37.0 41.0 34.0 41.0 30 38.098313398658625 40.0 36.0 41.0 34.0 41.0 31 38.0488108937476 40.0 36.0 41.0 34.0 41.0 32 38.01104543710988 40.0 36.0 41.0 34.0 41.0 33 37.97901773779219 40.0 36.0 41.0 34.0 41.0 34 37.89237745696319 40.0 36.0 41.0 34.0 41.0 35 37.82007357812881 40.0 36.0 41.0 34.0 41.0 36 37.7590795759668 40.0 36.0 41.0 34.0 41.0 37 37.688920272924875 40.0 36.0 41.0 33.0 41.0 38 37.61110965814648 40.0 35.0 41.0 33.0 41.0 39 37.57809975473957 40.0 35.0 41.0 33.0 41.0 40 37.474895677139635 40.0 35.0 41.0 33.0 41.0 41 37.42782107612372 40.0 35.0 41.0 33.0 41.0 42 37.37438684892655 40.0 35.0 41.0 33.0 41.0 43 37.28906004812219 39.0 35.0 41.0 33.0 41.0 44 37.222852808871224 39.0 35.0 41.0 33.0 41.0 45 37.190174181399726 39.0 35.0 41.0 33.0 41.0 46 37.09312631493299 39.0 35.0 41.0 33.0 41.0 47 37.07682695772454 39.0 35.0 41.0 33.0 41.0 48 37.03298665597285 39.0 35.0 41.0 33.0 41.0 49 36.939671455638084 39.0 35.0 41.0 32.0 41.0 50 36.869009426834516 39.0 35.0 41.0 32.0 41.0 51 36.1199349653032 38.0 35.0 40.0 30.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 4.0 9 7.0 10 5.0 11 14.0 12 10.0 13 15.0 14 20.0 15 29.0 16 31.0 17 68.0 18 100.0 19 196.0 20 335.0 21 519.0 22 860.0 23 1350.0 24 2061.0 25 2799.0 26 3873.0 27 4668.0 28 5498.0 29 6287.0 30 7515.0 31 9672.0 32 12794.0 33 18496.0 34 38003.0 35 61279.0 36 41852.0 37 63683.0 38 120218.0 39 285480.0 40 507.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.318757192174914 21.23449686740826 24.09233299624554 12.354412944171287 2 32.72148992804919 24.56352942543967 24.063419000127862 18.65156164638328 3 31.874266252862338 23.89894340412177 26.056741174692842 18.170049168323047 4 30.329764852204438 24.84816519626646 26.084928688496007 18.73714126303309 5 25.328515302623472 29.6730248398833 24.84453278469389 20.15392707279934 6 24.845985749322917 34.06417454173496 24.96411177366298 16.125727935279144 7 77.7889656054213 6.3757540886424655 10.274639374179074 5.560640931757158 8 77.58831119015238 6.2144750148202395 9.748956771396356 6.448257023631017 9 71.4714753984029 8.437946786623426 12.355430019411608 7.7351477955620656 10 40.0088340249445 25.527862049726263 19.39315479303972 15.070149132289522 11 30.568341644291014 25.844898931780403 24.356481965803027 19.23027745812556 12 28.277452313700874 22.00878171821785 29.516249956411063 20.19751601167021 13 24.232544082946845 25.84896723274169 29.67462310097523 20.24386558333624 14 19.56184398646999 28.916030268159155 29.738262951726703 21.78386279364415 15 19.78618172519208 25.894154432704493 34.83962176424777 19.480042077855657 16 21.19105322500029 26.350966512071228 30.88683149097418 21.571148771954295 17 21.433843614511048 24.486958189489837 28.478833211284304 25.600364984714812 18 22.52385767920866 26.118346874963677 29.73230579674768 21.62548964907998 19 23.563889760667667 27.616789296881354 27.03807348513908 21.7812474573119 20 24.750525973195707 27.425143262312424 27.654275784310308 20.17005498018156 21 23.08426613662517 28.135061780056027 28.745597517174044 20.03507456614476 22 21.735043182108775 25.2398844602527 27.652386930292565 25.37268542734596 23 21.00216782322651 26.872435517429764 28.26771745068638 23.857679208657345 24 22.46995269147168 25.570433913356815 29.03488277481373 22.924730620357778 25 20.83914519184945 26.773198033267075 28.039602003928817 24.348054770954654 26 19.507938998733014 28.13680533761086 28.481593844079462 23.873661819576665 27 21.834425962734365 26.49757064314026 28.6685903918355 22.999413002289874 28 18.435941695435364 26.33556508700352 31.487196475688993 23.741296741872116 29 19.80013018563076 25.111006497657822 30.251014169311063 24.837849147400355 30 21.655130127512177 25.210389278283408 29.634521277214027 23.499959316990388 31 22.080558170891887 25.967674442933365 28.353297067336193 23.598470318838558 32 22.771733444921015 26.13403889295719 28.003423184665994 23.0908044774558 33 22.3561855610187 24.2852866989806 28.422748776603786 24.935778963396913 34 20.088834257418835 23.59643616835792 31.465983192105174 24.848746382118073 35 21.408707326428843 23.17667468703142 30.462420522834794 24.952197463704945 36 23.145726540433103 24.85455824063419 28.926636909951064 23.073078308981646 37 21.98161127965501 24.497274238355942 32.6670037544606 20.85411072752845 38 22.102352640327325 26.226011553974732 28.1439248642931 23.52771094140484 39 23.45956690030338 23.00478897141728 29.392312073554884 24.14333205472446 40 22.979071497483467 22.735699922121096 30.171827597028976 24.11340098336646 41 21.587131382873615 23.7256047238786 28.46473945438272 26.222524438865058 42 24.108025014239054 23.287535888226337 28.330776115586243 24.27366298194837 43 23.496908091269425 22.17311201776104 30.12489683951134 24.205083051458196 44 20.645900896188582 23.640170403691695 30.16441747742093 25.549511222698797 45 20.888400692773534 23.05767688391394 29.464960305006333 26.588962118306192 46 22.761562692517813 22.983139798444746 29.79710801920238 24.458189489835057 47 20.903802117841245 22.780596529158096 32.22966140112285 24.085939951877812 48 21.807546117097328 21.78676872290221 30.984616010507843 25.421069149492624 49 22.311724843370413 21.1165161395311 32.397769408701514 24.173989608396973 50 21.299734979251664 21.064790598737666 31.369070451348936 26.266403970661738 51 20.78422312887215 21.866391184573004 28.47316664923109 28.876219037323757 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 281.0 1 760.0 2 1239.0 3 2136.0 4 3033.0 5 2137.5 6 1242.0 7 1239.5 8 1237.0 9 1235.0 10 1233.0 11 1248.0 12 1263.0 13 1222.0 14 1181.0 15 1236.5 16 1292.0 17 1231.0 18 1170.0 19 1153.5 20 1137.0 21 1822.0 22 2507.0 23 2510.5 24 2514.0 25 3077.5 26 4492.5 27 5344.0 28 6616.0 29 7888.0 30 9352.5 31 10817.0 32 11955.5 33 13094.0 34 14432.5 35 15771.0 36 17253.0 37 18735.0 38 20889.5 39 23044.0 40 26464.0 41 29884.0 42 34238.0 43 38592.0 44 44737.5 45 50883.0 46 58315.5 47 65748.0 48 73203.0 49 80658.0 50 76379.0 51 72100.0 52 61196.0 53 50292.0 54 44451.0 55 38610.0 56 35046.0 57 31482.0 58 28729.0 59 25976.0 60 24025.0 61 22074.0 62 20853.5 63 19633.0 64 17036.0 65 14439.0 66 12511.5 67 10584.0 68 8683.5 69 6783.0 70 5527.0 71 4271.0 72 3962.0 73 3653.0 74 3062.5 75 1900.5 76 1329.0 77 989.5 78 650.0 79 467.5 80 285.0 81 179.5 82 74.0 83 71.0 84 68.0 85 49.0 86 30.0 87 19.5 88 9.0 89 5.0 90 1.0 91 1.0 92 1.0 93 1.5 94 2.0 95 2.0 96 2.0 97 1.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 688248.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 26.697037357799168 #Duplication Level Percentage of deduplicated Percentage of total 1 68.7811023244504 18.3625165826646 2 12.679186284448635 6.769934198048401 3 5.13513388038866 4.112785831261088 4 2.6917265135943302 2.874444931616255 5 1.5585013634662739 2.080368456132003 6 0.9903650441116175 1.5863887548303768 7 0.7008903145731719 1.3098186438315709 8 0.536555459942287 1.1459552926888283 9 0.3986208386086436 0.9577795877938974 >10 5.387847964264303 36.931769740612644 >50 1.0409334893558564 17.280428442611573 >100 0.09362893819602354 4.527538418250308 >500 0.002753792299883045 0.5085981874749225 >1k 0.002753792299883045 1.5516729321835379 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GCTGTCTCTTATACACATCTGACGCCTTTCTGGTCGTATGCCGTCTTCTGC 3354 0.4873243365763504 No Hit CCTGTCTCTTATACACATCTGACGCCTTTCTGGTCGTATGCCGTCTTCTGC 2485 0.36106171031372414 No Hit CTGTCTCTTATACACATCTGACGCCTTTCTGGTCGTATGCCGTCTTCTGCT 1881 0.27330264672036825 Illumina Single End Adapter 2 (95% over 21bp) CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1541 0.22390184933337984 No Hit TCTGTCTCTTATACACATCTGACGCCTTTCTGGTCGTATGCCGTCTTCTGC 1292 0.18772303007055596 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCTTTCTGGTCGTATGCC 911 0.13236507770454836 No Hit ACTGTCTCTTATACACATCTGACGCCTTTCTGGTCGTATGCCGTCTTCTGC 898 0.13047622368681058 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 2.9059292580581417E-4 0.0 0.0 0.28202043449454267 0.0 2 4.3588938870872126E-4 0.0 0.0 1.4821692180725552 0.0 3 4.3588938870872126E-4 0.0 0.0 2.024996803477816 0.0 4 4.3588938870872126E-4 0.0 0.0 2.7469749276423614 0.0 5 4.3588938870872126E-4 0.0 0.0 4.597470679173786 0.0 6 4.3588938870872126E-4 0.0 0.0 5.642588136834397 0.0 7 4.3588938870872126E-4 0.0 0.0 6.731003940440074 0.0 8 4.3588938870872126E-4 0.0 0.0 8.428502516534737 0.0 9 4.3588938870872126E-4 0.0 0.0 9.099481582220362 0.0 10 4.3588938870872126E-4 0.0 0.0 10.566830561076822 0.0 11 4.3588938870872126E-4 0.0 0.0 12.442753193616255 0.0 12 4.3588938870872126E-4 0.0 0.0 13.998151828991874 0.0 13 4.3588938870872126E-4 0.0 0.0 14.66055840336623 0.0 14 4.3588938870872126E-4 0.0 0.0 14.924997965849519 0.0 15 4.3588938870872126E-4 0.0 0.0 15.405638665132336 0.0 16 4.3588938870872126E-4 0.0 0.0 16.319117527402913 0.0 17 4.3588938870872126E-4 0.0 0.0 17.44865223001011 0.0 18 4.3588938870872126E-4 0.0 0.0 18.794823958805548 0.0 19 4.3588938870872126E-4 0.0 0.0 19.488033383315315 0.0 20 5.811858516116283E-4 0.0 0.0 20.224250560844347 0.0 21 5.811858516116283E-4 0.0 0.0 21.009868535760365 0.0 22 5.811858516116283E-4 0.0 0.0 21.875544861735886 0.0 23 5.811858516116283E-4 0.0 0.0 22.662615801280932 0.0 24 5.811858516116283E-4 0.0 0.0 23.321389964082716 0.0 25 5.811858516116283E-4 0.0 0.0 23.921900245260428 0.0 26 5.811858516116283E-4 0.0 0.0 24.45659122874313 0.0 27 5.811858516116283E-4 0.0 0.0 24.976897862398438 0.0 28 5.811858516116283E-4 0.0 0.0 25.537451616277853 0.0 29 5.811858516116283E-4 0.0 0.0 26.111953830595947 0.0 30 5.811858516116283E-4 0.0 0.0 26.743412258371983 0.0 31 5.811858516116283E-4 0.0 0.0 27.34058072090293 0.0 32 5.811858516116283E-4 0.0 0.0 27.902442142948473 0.0 33 7.264823145145355E-4 0.0 0.0 28.458927595866605 0.0 34 7.264823145145355E-4 0.0 0.0 29.032558031407284 0.0 35 7.264823145145355E-4 0.0 0.0 29.60604317048506 0.0 36 7.264823145145355E-4 0.0 0.0 30.162092734014482 0.0 37 7.264823145145355E-4 0.0 0.0 30.68123699596657 0.0 38 7.264823145145355E-4 0.0 0.0 31.20444955887994 0.0 39 7.264823145145355E-4 0.0 0.0 31.76035382594646 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTATTCG 20 7.031311E-4 45.000004 9 TTCGTCA 20 7.031311E-4 45.000004 33 ACGTGCG 20 7.031311E-4 45.000004 1 GTCCGCA 20 7.031311E-4 45.000004 32 TCGTAAG 30 2.1642263E-6 45.000004 1 TATAGCG 20 7.031311E-4 45.000004 1 TAGTGCG 35 1.210974E-7 45.000004 1 CAATCGT 20 7.031311E-4 45.000004 42 CGATCAC 20 7.031311E-4 45.000004 10 TAAGACG 30 2.1642263E-6 45.000004 1 GTACGAG 20 7.031311E-4 45.000004 1 CTCGACG 25 3.889168E-5 45.0 1 CGGTCTA 25 3.889168E-5 45.0 31 ATCGCAT 25 3.889168E-5 45.0 10 ATCGATA 25 3.889168E-5 45.0 17 TCGATCA 75 0.0 42.0 17 TTACGCG 75 0.0 42.0 1 TACTTAT 130 0.0 41.53846 14 CGTAAGG 60 3.6379788E-12 41.250004 2 TCATGCG 50 1.0804797E-9 40.5 1 >>END_MODULE