SRR3551205_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551205_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	714146
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCCCAAATGCTCGTATGCCGTCTTCTGC	2308	0.32318321463678296	Illumina Single End Adapter 1 (95% over 21bp)
CCTGTCTCTTATACACATCTGACGCCCAAATGCTCGTATGCCGTCTTCTGC	2049	0.28691612079322715	Illumina Single End Adapter 1 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCCCAAATGCTCGTATGCCGTCTTCTGCT	1325	0.18553629089849974	Illumina Single End Adapter 1 (95% over 22bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1317	0.1844160717836409	No Hit
TCTGTCTCTTATACACATCTGACGCCCAAATGCTCGTATGCCGTCTTCTGC	920	0.12882519820876964	Illumina Single End Adapter 1 (95% over 21bp)
ATCCGCTAGTTCTGGCCCCTGGCCTCTGGCATAATATCTTCACAATGGTGC	899	0.1258846230322651	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	826	0.11566262360917796	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTGTACG	30	2.1643427E-6	45.000004	1
GTTAACG	30	2.1643427E-6	45.000004	1
TCGCACG	25	3.8893162E-5	45.0	1
GATCGTA	20	7.0314907E-4	45.0	10
TAAGTCG	20	7.0314907E-4	45.0	43
ATCGTAA	20	7.0314907E-4	45.0	11
CGAATCG	20	7.0314907E-4	45.0	24
CGAATAT	105	0.0	45.0	14
CTCGAAT	20	7.0314907E-4	45.0	11
ATAACGG	25	3.8893162E-5	45.0	2
ATAACGC	40	6.8084773E-9	45.0	11
TTCGCAA	40	6.8084773E-9	45.0	14
ACGAGAT	20	7.0314907E-4	45.0	43
CGTCAAT	25	3.8893162E-5	45.0	36
CAATACG	20	7.0314907E-4	45.0	20
ATACCCG	20	7.0314907E-4	45.0	22
TCGAAAC	20	7.0314907E-4	45.0	21
CTAGCGT	25	3.8893162E-5	45.0	14
TAACGGG	170	0.0	43.676468	3
ATAGCGG	65	0.0	41.538464	2