SRR3551199_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551199_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	625775
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCTCGGGTGATCGTATGCCGTCTTCTGC	1831	0.2925971794974232	No Hit
CCTGTCTCTTATACACATCTGACGCTCGGGTGATCGTATGCCGTCTTCTGC	1601	0.2558427549838201	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1201	0.19192201669929287	No Hit
CTGTCTCTTATACACATCTGACGCTCGGGTGATCGTATGCCGTCTTCTGCT	1005	0.16060085493987455	Illumina Single End Adapter 1 (95% over 21bp)
ATCCGCTAGTTCTGGCCCCTGGCCTCTGGCATAATATCTTCACAATGGTGC	763	0.12192880827773561	No Hit
CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCG	724	0.11569653629499421	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTCGGGTGATCGTATGCCG	653	0.10435060524949062	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATCCGTC	30	2.1639098E-6	45.000004	28
GCATCGC	30	2.1639098E-6	45.000004	22
CTCGTAT	20	7.03082E-4	45.0	39
ATTACGG	20	7.03082E-4	45.0	2
TAGCGCG	20	7.03082E-4	45.0	1
ATCGTAG	20	7.03082E-4	45.0	1
CGTTAGT	20	7.03082E-4	45.0	23
TGCGCGT	25	3.888762E-5	45.0	37
AGTTGCG	40	6.8066583E-9	45.0	1
CGGTCTA	25	3.888762E-5	45.0	31
TATCGCG	25	3.888762E-5	45.0	1
CGCCCGA	20	7.03082E-4	45.0	35
ATCGACT	25	3.888762E-5	45.0	41
GTACGAG	25	3.888762E-5	45.0	1
GTTGCGT	25	3.888762E-5	45.0	26
CGGACCA	20	7.03082E-4	45.0	37
CTAGCGG	75	0.0	42.0	2
TGAACGG	60	3.6379788E-12	41.250004	2
GCGTTAG	40	3.4548611E-7	39.375	1
ACTAAGG	80	0.0	39.375	2