##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3551199_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 625775 Sequences flagged as poor quality 0 Sequence length 51 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.4378762334705 33.0 31.0 34.0 31.0 34.0 2 32.53949582517678 34.0 31.0 34.0 31.0 34.0 3 32.55349286884263 34.0 31.0 34.0 31.0 34.0 4 36.02627621749031 37.0 35.0 37.0 35.0 37.0 5 36.06667572210459 37.0 35.0 37.0 35.0 37.0 6 36.093955495185966 37.0 36.0 37.0 35.0 37.0 7 36.215190763453315 37.0 37.0 37.0 35.0 37.0 8 35.902735008589346 37.0 37.0 37.0 35.0 37.0 9 37.784077344093326 39.0 38.0 39.0 35.0 39.0 10 37.67883025048939 39.0 37.0 39.0 35.0 39.0 11 37.6129631257241 39.0 37.0 39.0 35.0 39.0 12 37.47724981023531 39.0 37.0 39.0 35.0 39.0 13 37.41380847748791 39.0 37.0 39.0 35.0 39.0 14 38.68137908992849 40.0 38.0 41.0 35.0 41.0 15 38.76562981902441 40.0 38.0 41.0 35.0 41.0 16 38.81053733370621 40.0 38.0 41.0 35.0 41.0 17 38.8268019655627 40.0 38.0 41.0 35.0 41.0 18 38.8037074028205 40.0 38.0 41.0 35.0 41.0 19 38.77776197515081 40.0 38.0 41.0 35.0 41.0 20 38.717877831488956 40.0 38.0 41.0 35.0 41.0 21 38.653774919100314 40.0 38.0 41.0 35.0 41.0 22 38.62583037034078 40.0 38.0 41.0 35.0 41.0 23 38.60001278414766 40.0 38.0 41.0 35.0 41.0 24 38.534418920538535 40.0 38.0 41.0 35.0 41.0 25 38.4512564420119 40.0 37.0 41.0 35.0 41.0 26 38.431119811433824 40.0 37.0 41.0 35.0 41.0 27 38.368268147497105 40.0 37.0 41.0 35.0 41.0 28 38.309812632335905 40.0 37.0 41.0 34.0 41.0 29 38.299674803243974 40.0 37.0 41.0 34.0 41.0 30 38.21749830210539 40.0 37.0 41.0 34.0 41.0 31 38.11403299908114 40.0 37.0 41.0 34.0 41.0 32 38.04195118053614 40.0 37.0 41.0 34.0 41.0 33 37.9855986576645 40.0 37.0 41.0 34.0 41.0 34 37.879017218648876 40.0 36.0 41.0 34.0 41.0 35 37.81186209100715 40.0 36.0 41.0 33.0 41.0 36 37.75924094123287 40.0 36.0 41.0 33.0 41.0 37 37.69359913707003 40.0 36.0 41.0 33.0 41.0 38 37.62991170948025 40.0 36.0 41.0 33.0 41.0 39 37.54816986936199 40.0 35.0 41.0 33.0 41.0 40 37.40573049418721 40.0 35.0 41.0 33.0 41.0 41 37.32119851384284 40.0 35.0 41.0 33.0 41.0 42 37.32409252526867 40.0 35.0 41.0 33.0 41.0 43 37.30754504414526 40.0 35.0 41.0 33.0 41.0 44 37.25116695297831 39.0 35.0 41.0 33.0 41.0 45 37.15901721864888 39.0 35.0 41.0 33.0 41.0 46 37.004864368183455 39.0 35.0 41.0 32.0 41.0 47 36.924448883384606 39.0 35.0 41.0 32.0 41.0 48 36.870518956493946 39.0 35.0 41.0 32.0 41.0 49 36.78168670848148 39.0 35.0 41.0 32.0 41.0 50 36.71811433822061 39.0 35.0 41.0 32.0 41.0 51 35.875979385561905 38.0 35.0 40.0 30.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 2.0 9 4.0 10 7.0 11 11.0 12 18.0 13 15.0 14 22.0 15 38.0 16 50.0 17 60.0 18 106.0 19 204.0 20 337.0 21 522.0 22 792.0 23 1246.0 24 1783.0 25 2550.0 26 3488.0 27 4285.0 28 4661.0 29 5342.0 30 6419.0 31 8067.0 32 10806.0 33 15705.0 34 32484.0 35 50597.0 36 40451.0 37 60838.0 38 115234.0 39 259110.0 40 521.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.60045543526027 20.911030322400222 23.54919899324837 12.939315249091127 2 32.01102632735408 25.801925612240822 24.409412328712396 17.7776357316927 3 32.61795373736567 24.317366465582676 25.785945427669688 17.278734369381965 4 29.612081019535776 24.562182893212416 25.635891494546765 20.189844592705043 5 26.304981822540054 29.0815388917742 23.911789381167353 20.701689904518396 6 25.824297870640407 35.122368263353444 23.369901322360274 15.683432543645878 7 79.13259558147897 6.721745036155167 9.19084335424074 4.954816028125125 8 79.94183212816108 6.280212536454796 8.262394630657983 5.5155607047261395 9 73.28608525428469 8.625943829651233 10.748431944388956 7.339538971675124 10 41.358155886700494 24.624985018576965 18.044984219567738 15.971874875154807 11 30.45903080180576 25.67552235228317 23.29287683272742 20.572570013183654 12 29.140825376533098 22.496104830010786 27.80440254084935 20.558667252606767 13 25.47337301745835 24.331748631696694 28.361471774999004 21.833406575845952 14 20.33830050737086 28.48883384603092 28.231233270744276 22.941632375853942 15 20.004154847988495 27.045024170029166 32.130078702409016 20.820742279573327 16 22.606527905397307 25.335464024609482 30.58719188206624 21.47081618792697 17 22.809795853142102 25.63525228716392 27.064360193360233 24.490591666333746 18 23.43957492709041 26.1122607966122 28.196236666533498 22.251927609763893 19 24.739562941951977 26.841436618592944 26.831209300467417 21.587791138987654 20 26.561303983061002 25.370141025128838 27.234549159042786 20.834005832767367 21 25.909152650713114 26.559066757221046 27.085134433302706 20.446646158763134 22 23.816068075586273 25.360552914386158 26.73165275058927 24.091726259438296 23 23.428069194199193 26.65063321481363 27.12124965043346 22.800047940553714 24 23.555431265231114 25.491590427869443 28.16124006232272 22.791738244576727 25 23.400583276736846 26.99021213695018 26.819863369421913 22.789341216891053 26 21.940633614318244 27.821181734649038 26.914625863928727 23.32355878710399 27 23.29303663457313 27.62526467180696 26.972314330230514 22.1093843633894 28 22.010307219048382 26.668211417841874 28.725660181375094 22.59582118173465 29 22.24681395070113 25.591626383284726 28.390875314609882 23.77068435140426 30 22.660381127402022 26.59550157804323 27.160560904478448 23.583556390076303 31 25.12148935320203 26.664695777236226 25.258918940513762 22.95489592904798 32 25.409771882865247 26.582078223003474 26.19727537853062 21.810874515600656 33 24.7977308137909 27.15129239742719 24.857177100395507 23.193799688386402 34 23.4084135671767 25.7324118093564 27.560385122448167 23.29878950101874 35 24.925732092205667 24.409252526866684 26.867803923135313 23.79721145779234 36 24.677080420278855 27.499820222923578 25.360552914386158 22.46254644241141 37 24.409412328712396 27.134992609164637 26.764731732651516 21.690863329471455 38 25.192601174543565 26.741560465023372 25.067795933043023 22.998042427390036 39 25.22008709200591 25.26003755343374 27.133714194398944 22.3861611601614 40 25.282889217370464 24.275977787543447 29.14290280052735 21.298230194558748 41 21.88054812033079 25.58091965962207 28.215093284327438 24.323438935719707 42 22.855978586552673 26.195038152690664 27.07346889856578 23.875514362190884 43 24.153889177419998 25.50836962166913 26.931245255882708 23.406495945028166 44 24.03132116175942 24.93084575126843 26.81379089928489 24.224042187687267 45 24.13183652271184 24.446166753226002 26.3198433941912 25.10215332987096 46 24.462786145179976 26.08381606807559 26.298909352403022 23.154488434341417 47 23.484159642043867 25.371579241740243 29.053094163237585 22.091166952978305 48 23.293835643801685 24.481802564819624 28.11729455475211 24.107067236626584 49 22.917022891614398 24.43673844432903 29.321721065878307 23.32451759817826 50 22.75945827174304 24.146058886980146 28.648635691742243 24.44584714953458 51 22.25672166513523 24.45911070272862 26.977587791138983 26.306579840997163 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 368.0 1 881.5 2 1395.0 3 1999.0 4 2603.0 5 1908.5 6 1214.0 7 1172.0 8 1130.0 9 1163.0 10 1196.0 11 1205.0 12 1214.0 13 1128.0 14 1042.0 15 1145.5 16 1249.0 17 1235.0 18 1221.0 19 1386.5 20 1552.0 21 1817.5 22 2083.0 23 2233.5 24 2384.0 25 2924.5 26 4412.5 27 5360.0 28 6270.0 29 7180.0 30 8878.5 31 10577.0 32 11247.5 33 11918.0 34 13464.5 35 15011.0 36 16587.0 37 18163.0 38 19084.5 39 20006.0 40 22383.0 41 24760.0 42 27659.0 43 30558.0 44 32602.0 45 34646.0 46 38678.5 47 42711.0 48 47373.5 49 52036.0 50 54471.5 51 56907.0 52 57347.5 53 57788.0 54 50941.5 55 44095.0 56 40145.5 57 36196.0 58 33860.5 59 31525.0 60 29820.0 61 28115.0 62 25993.0 63 23871.0 64 21220.5 65 18570.0 66 15270.0 67 11970.0 68 10354.0 69 8738.0 70 7053.0 71 5368.0 72 4377.5 73 3387.0 74 2845.5 75 1622.5 76 941.0 77 754.0 78 567.0 79 402.5 80 238.0 81 179.0 82 120.0 83 70.0 84 20.0 85 14.0 86 8.0 87 6.0 88 4.0 89 2.5 90 1.0 91 0.5 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 625775.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 26.374222625686546 #Duplication Level Percentage of deduplicated Percentage of total 1 72.34395460811635 19.080155644570226 2 10.129597810678456 5.343205355350012 3 3.612773029698609 2.858522405440416 4 1.7445718150381686 1.8404690174525882 5 1.0852311452949803 1.4311063913169295 6 0.75037448925971 1.1874326299422855 7 0.5840030985449297 1.0781839414580314 8 0.519256000910242 1.0955978694184334 9 0.4386693834264489 1.0412607579805633 >10 8.3408313253787 54.1338624968268 >50 0.3742893130473235 5.9526330904353255 >100 0.0684973906230396 3.151650172176886 >500 0.00550425460363711 0.8965080944244401 >1k 0.0024463353793942708 0.9094121332070876 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GCTGTCTCTTATACACATCTGACGCTCGGGTGATCGTATGCCGTCTTCTGC 1831 0.2925971794974232 No Hit CCTGTCTCTTATACACATCTGACGCTCGGGTGATCGTATGCCGTCTTCTGC 1601 0.2558427549838201 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1201 0.19192201669929287 No Hit CTGTCTCTTATACACATCTGACGCTCGGGTGATCGTATGCCGTCTTCTGCT 1005 0.16060085493987455 Illumina Single End Adapter 1 (95% over 21bp) ATCCGCTAGTTCTGGCCCCTGGCCTCTGGCATAATATCTTCACAATGGTGC 763 0.12192880827773561 No Hit CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCG 724 0.11569653629499421 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCTCGGGTGATCGTATGCCG 653 0.10435060524949062 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 1.5980184571131798E-4 0.0 0.0 0.1661939195397707 0.0 2 1.5980184571131798E-4 0.0 0.0 0.8768327274180017 0.0 3 1.5980184571131798E-4 0.0 0.0 1.1771003955095682 0.0 4 1.5980184571131798E-4 0.0 0.0 1.5588670049139068 0.0 5 1.5980184571131798E-4 0.0 0.0 2.6597419200191763 0.0 6 1.5980184571131798E-4 0.0 0.0 3.3007071231672724 0.0 7 1.5980184571131798E-4 0.0 0.0 3.8499460668770724 0.0 8 1.5980184571131798E-4 0.0 0.0 4.637129958851025 0.0 9 1.5980184571131798E-4 0.0 0.0 4.980064719747513 0.0 10 1.5980184571131798E-4 0.0 0.0 5.904038991650354 0.0 11 1.5980184571131798E-4 0.0 0.0 7.111981143382206 0.0 12 1.5980184571131798E-4 0.0 0.0 8.17338500259678 0.0 13 1.5980184571131798E-4 0.0 0.0 8.585993368223402 0.0 14 1.5980184571131798E-4 0.0 0.0 8.74819224162039 0.0 15 1.5980184571131798E-4 0.0 0.0 9.066038112740202 0.0 16 1.5980184571131798E-4 0.0 0.0 9.683991850105869 0.0 17 1.5980184571131798E-4 0.0 0.0 10.341097039670808 0.0 18 1.5980184571131798E-4 0.0 0.0 11.063880787823098 0.0 19 1.5980184571131798E-4 0.0 0.0 11.529703168071592 0.0 20 1.5980184571131798E-4 0.0 0.0 11.9562142942751 0.0 21 1.5980184571131798E-4 0.0 0.0 12.504015021373498 0.0 22 1.5980184571131798E-4 0.0 0.0 13.077224241939994 0.0 23 1.5980184571131798E-4 0.0 0.0 13.60153409771883 0.0 24 1.5980184571131798E-4 0.0 0.0 14.042906795573488 0.0 25 1.5980184571131798E-4 0.0 0.0 14.442411409851784 0.0 26 1.5980184571131798E-4 0.0 0.0 14.812512484519196 0.0 27 1.5980184571131798E-4 0.0 0.0 15.175422476129599 0.0 28 1.5980184571131798E-4 0.0 0.0 15.55862730214534 0.0 29 1.5980184571131798E-4 0.0 0.0 15.937357676481163 0.0 30 1.5980184571131798E-4 0.0 0.0 16.356997323319085 0.0 31 1.5980184571131798E-4 0.0 0.0 16.75298629699173 0.0 32 1.5980184571131798E-4 0.0 0.0 17.160800607247015 0.0 33 1.5980184571131798E-4 0.0 0.0 17.540489792657105 0.0 34 1.5980184571131798E-4 0.0 0.0 17.9329631257241 0.0 35 1.5980184571131798E-4 0.0 0.0 18.349246933802085 0.0 36 1.5980184571131798E-4 0.0 0.0 18.72430186568655 0.0 37 1.5980184571131798E-4 0.0 0.0 19.120610443050616 0.0 38 1.5980184571131798E-4 0.0 0.0 19.47521073868403 0.0 39 1.5980184571131798E-4 0.0 0.0 19.8545803204027 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ATCCGTC 30 2.1639098E-6 45.000004 28 GCATCGC 30 2.1639098E-6 45.000004 22 CTCGTAT 20 7.03082E-4 45.0 39 ATTACGG 20 7.03082E-4 45.0 2 TAGCGCG 20 7.03082E-4 45.0 1 ATCGTAG 20 7.03082E-4 45.0 1 CGTTAGT 20 7.03082E-4 45.0 23 TGCGCGT 25 3.888762E-5 45.0 37 AGTTGCG 40 6.8066583E-9 45.0 1 CGGTCTA 25 3.888762E-5 45.0 31 TATCGCG 25 3.888762E-5 45.0 1 CGCCCGA 20 7.03082E-4 45.0 35 ATCGACT 25 3.888762E-5 45.0 41 GTACGAG 25 3.888762E-5 45.0 1 GTTGCGT 25 3.888762E-5 45.0 26 CGGACCA 20 7.03082E-4 45.0 37 CTAGCGG 75 0.0 42.0 2 TGAACGG 60 3.6379788E-12 41.250004 2 GCGTTAG 40 3.4548611E-7 39.375 1 ACTAAGG 80 0.0 39.375 2 >>END_MODULE