SRR3551197_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551197_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	380109
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCAGTTGTGGTCGTATGCCGTCTTCTGC	1655	0.43540142432828477	No Hit
GCTGTCTCTTATACACATCTGACGCAGTTGTGGTCGTATGCCGTCTTCTGC	1621	0.4264566216532626	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1048	0.27571038833597733	No Hit
CTGTCTCTTATACACATCTGACGCAGTTGTGGTCGTATGCCGTCTTCTGCT	1015	0.2670286680925735	Illumina Single End Adapter 2 (95% over 21bp)
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	624	0.16416343732981856	No Hit
GAATCTGTCTCTTATACACATCTGACGCAGTTGTGGTCGTATGCCGTCTTC	538	0.14153834821064484	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAGTTGTGGTCGTATGCC	534	0.14048601848417167	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAGTTGTGGTCGTATGCCG	528	0.13890752389446184	No Hit
TCTGTCTCTTATACACATCTGACGCAGTTGTGGTCGTATGCCGTCTTCTGC	506	0.13311971039885928	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCAGTTGTGGTCGTATGC	476	0.1252272374503103	No Hit
CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCG	438	0.11523010504881494	No Hit
GAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA	411	0.10812687939512086	No Hit
ATCCGCTAGTTCTGGCCCCTGGCCTCTGGCATAATATCTTCACAATGGTGC	402	0.1057591375105562	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CCCCGTG	30	2.1616543E-6	45.000004	18
GTCTTAC	30	2.1616543E-6	45.000004	31
TATACGG	30	2.1616543E-6	45.000004	2
CGGGTAC	20	7.027323E-4	45.0	6
ACACGCG	25	3.8858623E-5	45.0	36
CGTATGG	25	3.8858623E-5	45.0	2
CACGCCC	20	7.027323E-4	45.0	44
ATCGTTA	20	7.027323E-4	45.0	33
ATCGTAG	20	7.027323E-4	45.0	1
TAGTTAG	20	7.027323E-4	45.0	1
CAGGGTA	50	2.1827873E-11	45.0	5
CGTTAAG	20	7.027323E-4	45.0	35
AACGGCA	25	3.8858623E-5	45.0	40
GTTAACG	25	3.8858623E-5	45.0	1
ACTACGA	20	7.027323E-4	45.0	30
TACTAGA	20	7.027323E-4	45.0	30
TTACGCG	50	2.1827873E-11	45.0	1
AACTCGA	20	7.027323E-4	45.0	25
TCCCCGT	20	7.027323E-4	45.0	17
AATAGCG	20	7.027323E-4	45.0	1