SRR3551195_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551195_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	394036
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCGCTGAGGTTCGTATGCCGTCTTCTGC	2285	0.5798962531342314	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGCTGAGGTTCGTATGCCG	1540	0.3908272340598321	No Hit
GAATCTGTCTCTTATACACATCTGACGCGCTGAGGTTCGTATGCCGTCTTC	1490	0.3781380381487986	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGCTGAGGTTCGTATGC	1440	0.3654488422377651	No Hit
CCTGTCTCTTATACACATCTGACGCGCTGAGGTTCGTATGCCGTCTTCTGC	1274	0.3233207118131338	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1222	0.31012394806565896	No Hit
CTGTCTCTTATACACATCTGACGCGCTGAGGTTCGTATGCCGTCTTCTGCT	1151	0.2921052898719914	Illumina Single End Adapter 1 (95% over 21bp)
TCTGTCTCTTATACACATCTGACGCGCTGAGGTTCGTATGCCGTCTTCTGC	835	0.21190957171425961	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGCTGAGGTTCGTATGCC	608	0.1543006222781675	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	606	0.15379305444172614	No Hit
ACTGTCTCTTATACACATCTGACGCGCTGAGGTTCGTATGCCGTCTTCTGC	571	0.14491061730400268	No Hit
AGCTACCATTACATTTATTATTTTACTTCTACTCACAATTCTAGAATTTGC	553	0.1403425067760306	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	399	0.10125978337004742	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGCAGG	20	7.0276356E-4	45.000004	2
ACACGAA	20	7.0276356E-4	45.000004	32
TCCGCAT	20	7.0276356E-4	45.000004	26
CGAGTAC	20	7.0276356E-4	45.000004	9
CGACGGT	20	7.0276356E-4	45.000004	28
CGCATGT	20	7.0276356E-4	45.000004	28
GTTAGTC	20	7.0276356E-4	45.000004	23
TACGGGT	20	7.0276356E-4	45.000004	4
GACCCTA	40	6.7957444E-9	45.000004	12
AGAACCG	20	7.0276356E-4	45.000004	10
CTACGCC	20	7.0276356E-4	45.000004	14
CGAGGGT	40	6.7957444E-9	45.000004	4
AACGACT	20	7.0276356E-4	45.000004	27
ATGCGCG	20	7.0276356E-4	45.000004	1
CGATGAT	20	7.0276356E-4	45.000004	10
GAACCGC	20	7.0276356E-4	45.000004	11
GCTACGC	20	7.0276356E-4	45.000004	13
GAACACG	20	7.0276356E-4	45.000004	30
CGTTTGA	20	7.0276356E-4	45.000004	44
ACGACTT	20	7.0276356E-4	45.000004	13