##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3551195_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 394036 Sequences flagged as poor quality 0 Sequence length 51 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.224659675765665 33.0 31.0 34.0 30.0 34.0 2 32.32303647382473 34.0 31.0 34.0 30.0 34.0 3 32.35151864296663 34.0 31.0 34.0 30.0 34.0 4 35.87601132891411 37.0 35.0 37.0 35.0 37.0 5 35.9324224182562 37.0 35.0 37.0 35.0 37.0 6 35.96386117004538 37.0 35.0 37.0 35.0 37.0 7 36.141306885665266 37.0 36.0 37.0 35.0 37.0 8 35.780484524256664 37.0 35.0 37.0 35.0 37.0 9 37.66951750601468 39.0 38.0 39.0 35.0 39.0 10 37.564699672111175 39.0 37.0 39.0 35.0 39.0 11 37.48108294673583 39.0 37.0 39.0 35.0 39.0 12 37.25647656559299 39.0 37.0 39.0 35.0 39.0 13 37.128929843973644 39.0 37.0 39.0 33.0 39.0 14 38.304588920809266 40.0 37.0 41.0 34.0 41.0 15 38.39383203565156 40.0 37.0 41.0 34.0 41.0 16 38.48472220812312 40.0 37.0 41.0 35.0 41.0 17 38.4982463531251 40.0 37.0 41.0 35.0 41.0 18 38.52096508948421 40.0 37.0 41.0 35.0 41.0 19 38.5161025896111 40.0 37.0 41.0 35.0 41.0 20 38.39862093818839 40.0 37.0 41.0 34.0 41.0 21 38.36522297455055 40.0 37.0 41.0 34.0 41.0 22 38.34747840298856 40.0 37.0 41.0 34.0 41.0 23 38.31405252311971 40.0 37.0 41.0 34.0 41.0 24 38.2641205372098 40.0 36.0 41.0 34.0 41.0 25 38.1892111380686 40.0 36.0 41.0 34.0 41.0 26 38.195294338588354 40.0 36.0 41.0 34.0 41.0 27 38.150856774507915 40.0 36.0 41.0 34.0 41.0 28 38.101972916180245 40.0 36.0 41.0 34.0 41.0 29 38.10406917134475 40.0 36.0 41.0 34.0 41.0 30 38.01253438772092 40.0 36.0 41.0 34.0 41.0 31 37.95602178481154 40.0 36.0 41.0 34.0 41.0 32 37.833682709194086 40.0 36.0 41.0 34.0 41.0 33 37.708156107563774 40.0 36.0 41.0 33.0 41.0 34 37.657069404825954 40.0 36.0 41.0 33.0 41.0 35 37.58891065790943 40.0 35.0 41.0 33.0 41.0 36 37.466076703651446 40.0 35.0 41.0 33.0 41.0 37 37.42766396978956 40.0 35.0 41.0 33.0 41.0 38 37.33517242079404 40.0 35.0 41.0 33.0 41.0 39 37.257194774081555 40.0 35.0 41.0 33.0 41.0 40 37.15738663472373 39.0 35.0 41.0 33.0 41.0 41 37.10048828025866 39.0 35.0 41.0 32.0 41.0 42 37.060649280776374 39.0 35.0 41.0 32.0 41.0 43 36.98509780832208 39.0 35.0 41.0 32.0 41.0 44 36.969137337705185 39.0 35.0 41.0 32.0 41.0 45 36.92812585652072 39.0 35.0 41.0 32.0 41.0 46 36.78691540874438 39.0 35.0 41.0 32.0 41.0 47 36.70864337268676 39.0 35.0 41.0 31.0 41.0 48 36.68957404907166 39.0 35.0 41.0 31.0 41.0 49 36.594369549990354 39.0 35.0 41.0 31.0 41.0 50 36.522457338923346 39.0 35.0 41.0 31.0 41.0 51 35.70945801906425 38.0 35.0 40.0 29.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 2.0 9 1.0 10 4.0 11 6.0 12 2.0 13 7.0 14 13.0 15 11.0 16 24.0 17 35.0 18 73.0 19 133.0 20 214.0 21 353.0 22 578.0 23 873.0 24 1326.0 25 1891.0 26 2540.0 27 3066.0 28 3436.0 29 3984.0 30 4732.0 31 6063.0 32 8111.0 33 11247.0 34 22770.0 35 37199.0 36 24793.0 37 36872.0 38 71438.0 39 151945.0 40 294.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 44.16601528794323 20.76967586717965 23.370707245023297 11.693601599853821 2 32.08996132333086 25.911591834248647 23.980550000507566 18.017896841912922 3 31.16111218264321 25.94915185414531 26.229075515942707 16.66066044726878 4 27.975362657219137 25.11394897928108 27.572100011166494 19.33858835233329 5 25.497670263630734 28.489528875534216 25.1743495518176 20.83845130901745 6 25.244647697164723 33.28147681937691 25.475844846663758 15.998030636794608 7 75.89611101523718 6.648377305626897 11.6859880823072 5.769523596828717 8 74.53329137439219 7.527484798343298 10.901034423250668 7.038189404013846 9 68.4546589651707 8.300003045407019 13.649514257580526 9.59582373184176 10 40.15546802830198 24.931478342080418 20.10780740846014 14.805246221157459 11 31.332670111360382 24.66322874052117 24.392695083697934 19.611406064420507 12 28.807773908982938 22.525860581266684 29.45898344313718 19.207382066613203 13 23.55393923397862 27.565247845374536 30.537818879493244 18.342994041153602 14 18.4571968043529 31.296125227136606 28.9854226517374 21.261255316773088 15 17.416428955729934 26.32906637972165 37.322224365286424 18.932280299261997 16 18.798282390441482 25.34387720918901 33.185800282207715 22.672040118161792 17 18.962734369448476 25.19211442609305 29.413809905693896 26.431341298764583 18 20.118212549107188 26.213087129094802 31.382157975413417 22.286542346384593 19 23.255743130069334 26.444030494675612 28.6440832817306 21.65614309352445 20 24.578464911835468 26.01488188896446 29.82722390847537 19.579429290724708 21 21.950532438660428 27.81700149224944 29.552883492878824 20.67958257621131 22 19.535270888954308 26.44149265549341 28.01114618968825 26.012090265864035 23 19.909348384411576 27.019612421200094 29.491467784669425 23.57957140971891 24 21.47494137591489 24.118608452019615 30.82814768193769 23.578302490127808 25 19.786516967992775 27.44267021287395 28.777066054878237 23.993746764255043 26 19.678405018830766 28.107076510775663 28.295130394177182 23.919388076216386 27 21.687866083302033 27.94871534580597 28.43877209189008 21.924646479001918 28 18.002162238983242 26.443522926839176 32.8860814747891 22.66823335938848 29 22.29212559258545 24.18306956724766 29.921377742135235 23.603427098031652 30 21.608177932980745 26.52930189119776 28.004547807814518 23.857972368006987 31 25.179171446263794 26.00346161264453 25.731405252311973 23.085961688779705 32 26.268665807185133 27.04879757179547 25.606289780629183 21.076246840390215 33 23.322742084479593 27.258676872163967 25.94077698484402 23.47780405851242 34 23.759504207737365 25.504522429422693 27.930189119775857 22.805784243064085 35 24.237886893583326 24.03815894994366 26.789937975210385 24.934016181262624 36 24.40462292785431 25.56492300195921 28.34664852957598 21.6838055406105 37 23.51485651057264 25.295658264727084 29.811743089463903 21.377742135236375 38 22.10331035742927 27.38226964033743 26.99220375803226 23.52221624420104 39 25.46467835426205 24.120384939447156 29.405181252474392 21.009755453816403 40 26.46255672070572 23.446081068734838 28.673014648407758 21.41834756215168 41 22.543371671623913 23.85315047356079 27.979169415992448 25.624308438822847 42 23.695804444263977 22.862124272909075 29.915794495934385 23.52627678689257 43 24.328487752388106 23.320204245297386 28.712351155731962 23.638956846582545 44 22.293902080012995 24.653331167710565 28.171030058167272 24.88173669410917 45 22.749190429300874 24.30716990325757 26.25318498817367 26.690454679267884 46 24.868793714279914 25.80728664385995 26.42753453999127 22.896385101868866 47 22.22817204519384 23.718644996903837 31.850135520612326 22.203047437289992 48 22.539311128932383 22.208884467409067 30.177191931701675 25.074612471956875 49 21.888101594778142 21.69091149032068 32.840907937345825 23.58007897755535 50 21.706646093250363 22.208884467409067 30.869260676689443 25.215208762651127 51 21.3571856378605 22.916434031408297 27.061740551624723 28.664639779106476 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 244.0 1 547.0 2 850.0 3 1523.5 4 2197.0 5 1537.5 6 878.0 7 895.0 8 912.0 9 899.5 10 887.0 11 907.5 12 928.0 13 868.0 14 808.0 15 842.5 16 877.0 17 884.0 18 891.0 19 989.5 20 1088.0 21 1149.5 22 1211.0 23 1360.0 24 1509.0 25 1878.0 26 2827.5 27 3408.0 28 4020.0 29 4632.0 30 5528.0 31 6424.0 32 6850.5 33 7277.0 34 8523.0 35 9769.0 36 10961.0 37 12153.0 38 12341.5 39 12530.0 40 13467.0 41 14404.0 42 17606.5 43 20809.0 44 23791.0 45 26773.0 46 28019.0 47 29265.0 48 35404.0 49 41543.0 50 42886.0 51 44229.0 52 42982.5 53 41736.0 54 34823.5 55 27911.0 56 23642.0 57 19373.0 58 17037.0 59 14701.0 60 13707.0 61 12713.0 62 11031.0 63 9349.0 64 8219.5 65 7090.0 66 6076.0 67 5062.0 68 4139.0 69 3216.0 70 2455.0 71 1694.0 72 1361.0 73 1028.0 74 947.5 75 588.5 76 310.0 77 244.0 78 178.0 79 101.0 80 24.0 81 26.0 82 28.0 83 17.0 84 6.0 85 5.0 86 4.0 87 3.5 88 3.0 89 1.5 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 394036.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 29.403946342581662 #Duplication Level Percentage of deduplicated Percentage of total 1 70.11058366261406 20.61527840062586 2 12.28199716586774 7.222783712898301 3 4.88570144969987 4.309767098185453 4 2.510561009537636 2.952816048568892 5 1.4555318535613893 2.1399190261018757 6 0.9208103250558246 1.6245274433781987 7 0.6479247814372974 1.333608185518787 8 0.49979998536696507 1.1756873561402672 9 0.36986891014731055 0.9788045028984609 >10 5.752456289966454 41.906728972161986 >50 0.48160904771543356 8.567529991261507 >100 0.07276107915125254 3.7150244501022756 >500 0.004331016616145985 0.8081566282856522 >1k 0.006063423262604379 2.6493681838724714 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GCTGTCTCTTATACACATCTGACGCGCTGAGGTTCGTATGCCGTCTTCTGC 2285 0.5798962531342314 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCGCTGAGGTTCGTATGCCG 1540 0.3908272340598321 No Hit GAATCTGTCTCTTATACACATCTGACGCGCTGAGGTTCGTATGCCGTCTTC 1490 0.3781380381487986 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCGCTGAGGTTCGTATGC 1440 0.3654488422377651 No Hit CCTGTCTCTTATACACATCTGACGCGCTGAGGTTCGTATGCCGTCTTCTGC 1274 0.3233207118131338 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1222 0.31012394806565896 No Hit CTGTCTCTTATACACATCTGACGCGCTGAGGTTCGTATGCCGTCTTCTGCT 1151 0.2921052898719914 Illumina Single End Adapter 1 (95% over 21bp) TCTGTCTCTTATACACATCTGACGCGCTGAGGTTCGTATGCCGTCTTCTGC 835 0.21190957171425961 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGCTGAGGTTCGTATGCC 608 0.1543006222781675 No Hit GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT 606 0.15379305444172614 No Hit ACTGTCTCTTATACACATCTGACGCGCTGAGGTTCGTATGCCGTCTTCTGC 571 0.14491061730400268 No Hit AGCTACCATTACATTTATTATTTTACTTCTACTCACAATTCTAGAATTTGC 553 0.1403425067760306 No Hit AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG 399 0.10125978337004742 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.3032717822737009 0.0 2 0.0 0.0 0.0 1.6155884233927864 0.0 3 0.0 0.0 0.0 2.1581784405485793 0.0 4 0.0 0.0 0.0 2.89694342648895 0.0 5 0.0 0.0 0.0 5.112730816473622 0.0 6 0.0 0.0 0.0 6.1192378361368 0.0 7 0.0 0.0 0.0 7.188683267518704 0.0 8 0.0 0.0 0.0 8.672304053436742 0.0 9 0.0 0.0 0.0 9.300419251032901 0.0 10 0.0 0.0 0.0 11.059649372138587 0.0 11 0.0 0.0 0.0 13.050330426661523 0.0 12 0.0 0.0 0.0 14.958277923844522 0.0 13 0.0 0.0 0.0 15.58233257874915 0.0 14 0.0 0.0 0.0 15.856672994345693 0.0 15 0.0 0.0 0.0 16.436569247479927 0.0 16 0.0 0.0 0.0 17.487996020668163 0.0 17 0.0 0.0 0.0 18.63002365266118 0.0 18 0.0 0.0 0.0 19.953506786181972 0.0 19 0.0 0.0 0.0 20.740998284420712 0.0 20 0.0 0.0 0.0 21.434843516836025 0.0 21 0.0 0.0 0.0 22.33374615517364 0.0 22 0.0 0.0 0.0 23.232902577429474 0.0 23 0.0 0.0 0.0 24.112263854064096 0.0 24 0.0 0.0 0.0 24.813976387944248 0.0 25 0.0 0.0 0.0 25.459602675897635 0.0 26 0.0 0.0 0.0 26.00244647697165 0.0 27 0.0 0.0 0.0 26.573714076886375 0.0 28 0.0 0.0 0.0 27.122902475915907 0.0 29 0.0 0.0 0.0 27.684018719101807 0.0 30 0.0 0.0 0.0 28.334213117583165 0.0 31 2.5378391822067017E-4 0.0 0.0 28.97958562161833 0.0 32 2.5378391822067017E-4 0.0 0.0 29.583337563065303 0.0 33 2.5378391822067017E-4 0.0 0.0 30.11577622349227 0.0 34 2.5378391822067017E-4 0.0 0.0 30.656082185384076 0.0 35 2.5378391822067017E-4 0.0 0.0 31.272523322742085 0.0 36 2.5378391822067017E-4 0.0 0.0 31.830086591072895 0.0 37 2.5378391822067017E-4 0.0 0.0 32.39932391964186 0.0 38 2.5378391822067017E-4 0.0 0.0 32.94318285638876 0.0 39 2.5378391822067017E-4 0.0 0.0 33.4974469337827 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCGCAGG 20 7.0276356E-4 45.000004 2 ACACGAA 20 7.0276356E-4 45.000004 32 TCCGCAT 20 7.0276356E-4 45.000004 26 CGAGTAC 20 7.0276356E-4 45.000004 9 CGACGGT 20 7.0276356E-4 45.000004 28 CGCATGT 20 7.0276356E-4 45.000004 28 GTTAGTC 20 7.0276356E-4 45.000004 23 TACGGGT 20 7.0276356E-4 45.000004 4 GACCCTA 40 6.7957444E-9 45.000004 12 AGAACCG 20 7.0276356E-4 45.000004 10 CTACGCC 20 7.0276356E-4 45.000004 14 CGAGGGT 40 6.7957444E-9 45.000004 4 AACGACT 20 7.0276356E-4 45.000004 27 ATGCGCG 20 7.0276356E-4 45.000004 1 CGATGAT 20 7.0276356E-4 45.000004 10 GAACCGC 20 7.0276356E-4 45.000004 11 GCTACGC 20 7.0276356E-4 45.000004 13 GAACACG 20 7.0276356E-4 45.000004 30 CGTTTGA 20 7.0276356E-4 45.000004 44 ACGACTT 20 7.0276356E-4 45.000004 13 >>END_MODULE