SRR3551194_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551194_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	655066
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCAAGGAGCTTCGTATGCCGTCTTCTGC	1159	0.17692873695169647	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1070	0.16334231970519	No Hit
ATCCGCTAGTTCTGGCCCCTGGCCTCTGGCATAATATCTTCACAATGGTGC	871	0.1329637013674958	No Hit
CCTGTCTCTTATACACATCTGACGCAAGGAGCTTCGTATGCCGTCTTCTGC	839	0.1280786974136957	No Hit
CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCG	825	0.12594150818390817	No Hit
GCACAAGAGTGAGGAGAGCTAAAAGGACATGTAAGAAACCAATCAAGATCA	775	0.11830868950609558	No Hit
AGCTACCATTACATTTATTATTTTACTTCTACTCACAATTCTAGAATTTGC	693	0.10579086687448289	No Hit
AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	684	0.1044169595124766	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CAAACGG	40	6.8066583E-9	45.000004	2
CGAACGC	20	7.031061E-4	45.000004	25
TTTACGC	20	7.031061E-4	45.000004	35
CGTGCGT	20	7.031061E-4	45.000004	12
GACACGC	20	7.031061E-4	45.000004	13
CGGTTGT	20	7.031061E-4	45.000004	16
TCGATAG	20	7.031061E-4	45.000004	1
CGCTAAG	20	7.031061E-4	45.000004	2
TATAGCG	40	6.8066583E-9	45.000004	1
GTACGAC	20	7.031061E-4	45.000004	35
ACCGGTA	30	2.1640662E-6	44.999996	41
GGTCCTA	25	3.8889633E-5	44.999996	9
GTCAACG	25	3.8889633E-5	44.999996	1
TCGTAAG	30	2.1640662E-6	44.999996	1
GGTTCGT	25	3.8889633E-5	44.999996	8
GTACGAG	30	2.1640662E-6	44.999996	1
CGTAAGG	95	0.0	42.63158	2
AGACACG	150	0.0	42.0	24
AGTAGCG	65	0.0	41.538464	1
AGTACGG	60	3.6379788E-12	41.249996	2