SRR3551192_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551192_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	653406
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCGGATACGTTCGTATGCCGTCTTCTGC	2235	0.34205379197619856	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGGATACGTTCGTATGC	1768	0.2705821495364291	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGGATACGTTCGTATGCCG	1690	0.2586447017627631	No Hit
GAATCTGTCTCTTATACACATCTGACGCGGATACGTTCGTATGCCGTCTTC	1611	0.24655420978687065	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1111	0.1700321086736271	No Hit
CTGTCTCTTATACACATCTGACGCGGATACGTTCGTATGCCGTCTTCTGCT	861	0.13177105811700537	Illumina Single End Adapter 1 (95% over 21bp)
GCACAAGAGTGAGGAGAGCTAAAAGGACATGTAAGAAACCAATCAAGATCA	769	0.11769099151216855	No Hit
CCTGTCTCTTATACACATCTGACGCGGATACGTTCGTATGCCGTCTTCTGC	758	0.1160075052876772	No Hit
CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCG	701	0.10728398576076742	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	692	0.10590658794072903	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTTTTA	45	3.8380676E-10	45.000004	13
TGTTTCG	20	7.0310506E-4	45.0	42
AACCGAT	20	7.0310506E-4	45.0	33
AATCCGT	20	7.0310506E-4	45.0	10
GTCGACC	20	7.0310506E-4	45.0	40
CCGATTT	20	7.0310506E-4	45.0	40
CCGATAT	20	7.0310506E-4	45.0	10
TAGCGCG	20	7.0310506E-4	45.0	1
TCGGGAT	55	1.8189894E-12	45.0	5
ATTCGCA	20	7.0310506E-4	45.0	44
ATTCGAT	20	7.0310506E-4	45.0	11
TTATCGC	20	7.0310506E-4	45.0	31
CCGTATA	20	7.0310506E-4	45.0	13
TCAATCA	20	7.0310506E-4	45.0	28
ATTCACG	25	3.888952E-5	45.0	40
GTATGCG	20	7.0310506E-4	45.0	1
TCGTCGA	25	3.888952E-5	45.0	26
ACGTCGA	20	7.0310506E-4	45.0	17
CGTAACA	20	7.0310506E-4	45.0	15
CGTCGAT	25	3.888952E-5	45.0	27