SRR3551191_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551191_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	993396
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCCCTGTAACTCGTATGCCGTCTTCTGC	3663	0.36873512677723685	Illumina PCR Primer Index 2 (95% over 24bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2443	0.24592408264176624	No Hit
CCTGTCTCTTATACACATCTGACGCCCTGTAACTCGTATGCCGTCTTCTGC	2314	0.2329383246962943	Illumina PCR Primer Index 2 (95% over 24bp)
GAATCTGTCTCTTATACACATCTGACGCCCTGTAACTCGTATGCCGTCTTC	2145	0.21592597513982337	Illumina PCR Primer Index 2 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCCCTGTAACTCGTATGCCGTCTTCTGCT	1872	0.18844448739475497	Illumina PCR Primer Index 2 (96% over 25bp)
GAATGATACCTGTCTCTTATACACATCTGACGCCCTGTAACTCGTATGCCG	1752	0.17636471256175784	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCCTGTAACTCGTATGC	1523	0.15331247558878836	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	1247	0.125528993472895	No Hit
ATCCGCTAGTTCTGGCCCCTGGCCTCTGGCATAATATCTTCACAATGGTGC	1246	0.12542832868262002	No Hit
TCTGTCTCTTATACACATCTGACGCCCTGTAACTCGTATGCCGTCTTCTGC	1168	0.1175764750411719	Illumina PCR Primer Index 2 (95% over 24bp)
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCCTGTAACTCGTATGCC	1025	0.10318141003185033	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTTCACG	25	3.890421E-5	45.000004	1
GTACGAG	50	2.1827873E-11	45.000004	1
GTCGATG	35	1.2117016E-7	45.0	1
CCGTACA	20	7.032823E-4	45.0	39
GTATACG	20	7.032823E-4	45.0	1
CCGTTCG	20	7.032823E-4	45.0	10
AAATGCG	35	1.2117016E-7	45.0	1
GTCAACG	30	2.1652031E-6	44.999996	1
CGAATAT	235	0.0	43.085106	14
TACGAAT	240	0.0	42.187496	12
GCTACGA	245	0.0	41.32653	10
CGAAAGG	55	6.002665E-11	40.909092	2
CATACGA	160	0.0	40.78125	18
CGTAAGG	105	0.0	40.714283	2
CTACGAA	255	0.0	40.588234	11
CGTATGG	100	0.0	40.500004	2
CCTATGC	235	0.0	40.212765	35
GGTACGT	45	1.927765E-8	40.000004	8
GGCCGAT	140	0.0	38.571426	8
TACGGGA	415	0.0	38.493977	4