SRR3551189_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551189_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1312499
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6635	0.5055241946851007	No Hit
GCTGTCTCTTATACACATCTGACGCACAATCCCTCGTATGCCGTCTTCTGC	3050	0.23238112943324146	TruSeq Adapter, Index 19 (95% over 21bp)
GAATCTGTCTCTTATACACATCTGACGCACAATCCCTCGTATGCCGTCTTC	2890	0.22019064395477636	No Hit
CCTGTCTCTTATACACATCTGACGCACAATCCCTCGTATGCCGTCTTCTGC	2192	0.16700965105497223	TruSeq Adapter, Index 19 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCACAATCCCTCGTATGCCGTCTTCTGCT	2187	0.1666286983837702	TruSeq Adapter, Index 13 (95% over 22bp)
GAATGATACCTGTCTCTTATACACATCTGACGCACAATCCCTCGTATGCCG	1910	0.14552392039917744	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	1766	0.13455248346855883	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCACAATCCCTCGTATGC	1696	0.12921914607173032	No Hit
ATCCGCTAGTTCTGGCCCCTGGCCTCTGGCATAATATCTTCACAATGGTGC	1379	0.10506674671752131	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TATCGAG	20	7.0336525E-4	45.000004	17
CGTATGG	135	0.0	43.333332	2
GTTAACG	65	0.0	41.538464	1
GCTACGA	335	0.0	40.298508	10
CGTTTTT	3270	0.0	40.114677	1
TATAGCG	45	1.9286745E-8	40.0	1
CGCGACT	35	6.2489653E-6	38.57143	32
TTAGTCG	35	6.2489653E-6	38.57143	1
TATACGG	35	6.2489653E-6	38.57143	2
TTTAGCG	65	9.094947E-12	38.076927	1
GCGTTAG	65	9.094947E-12	38.076927	1
CGAATAT	350	0.0	37.92857	14
CTACCGT	30	1.1400099E-4	37.500004	12
CGCACGG	120	0.0	37.500004	2
CGGTAAT	30	1.1400099E-4	37.500004	6
AGCTACG	360	0.0	36.875	9
TCGTAAG	110	0.0	36.81818	1
TACAGCG	110	0.0	36.81818	1
CGTAAGG	255	0.0	36.17647	2
ATTGCGG	225	0.0	36.0	2