SRR3551184_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551184_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	726902
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACCTGTCTCTTATACACATCTGACGCTGGTGGCTTCGTATGCCG	7488	1.0301251062729226	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTGGTGGCTTCGTATGC	7212	0.9921557513942734	No Hit
GAATCTGTCTCTTATACACATCTGACGCTGGTGGCTTCGTATGCCGTCTTC	6393	0.8794858178956724	No Hit
GCTGTCTCTTATACACATCTGACGCTGGTGGCTTCGTATGCCGTCTTCTGC	2719	0.37405317360524526	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTGGTGGCTT	2157	0.2967387625842273	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2093	0.28793427449642456	No Hit
GAATGACTGTCTCTTATACACATCTGACGCTGGTGGCTTCGTATGCCGTCT	1507	0.20731818044248057	No Hit
CCTGTCTCTTATACACATCTGACGCTGGTGGCTTCGTATGCCGTCTTCTGC	1184	0.16288302962435103	No Hit
GAACTGTCTCTTATACACATCTGACGCTGGTGGCTTCGTATGCCGTCTTCT	1165	0.16026919722328456	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCTGGTGGCTTCGTA	1144	0.1573802245694743	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	1016	0.13977124839386876	No Hit
CTGTCTCTTATACACATCTGACGCTGGTGGCTTCGTATGCCGTCTTCTGCT	891	0.12257498259737902	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCTGGTGGCTTCGTATGCCGTC	841	0.1156964762787831	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TAATGCG	35	1.2111013E-7	45.000004	1
CGCATCG	25	3.8893864E-5	45.0	21
ATCGTGT	20	7.0315733E-4	45.0	42
CGTAAGC	25	3.8893864E-5	45.0	43
TAGGCCG	25	3.8893864E-5	45.0	29
GAACCCG	20	7.0315733E-4	45.0	45
GACGCAC	25	3.8893864E-5	45.0	33
CGCCCAC	20	7.0315733E-4	45.0	34
AATCGTC	25	3.8893864E-5	45.0	40
AGGTCGA	25	3.8893864E-5	45.0	11
ATCCCGT	30	2.1643973E-6	44.999996	28
CGAAAGG	80	0.0	42.1875	2
GCTACGG	140	0.0	41.785717	2
CGGGTAT	65	0.0	41.53846	6
TACGAGG	65	0.0	41.53846	2
CGTAAGG	120	0.0	41.249996	2
TACGGCT	850	0.0	40.764706	7
CCGATGA	910	0.0	40.54945	18
ACGGCTG	860	0.0	40.2907	8
CTACGGG	215	0.0	39.767445	3