##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3551176_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 736696 Sequences flagged as poor quality 0 Sequence length 51 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.973390652317917 33.0 31.0 34.0 30.0 34.0 2 32.094158241662775 33.0 31.0 34.0 30.0 34.0 3 32.004374938916456 33.0 31.0 34.0 30.0 34.0 4 35.67286099015062 37.0 35.0 37.0 33.0 37.0 5 32.02139281331784 37.0 35.0 37.0 0.0 37.0 6 33.77319002682246 37.0 35.0 37.0 17.0 37.0 7 35.37620809669117 37.0 35.0 37.0 32.0 37.0 8 35.57728968258277 37.0 35.0 37.0 33.0 37.0 9 37.49822179026356 39.0 37.0 39.0 35.0 39.0 10 37.225205512178704 39.0 37.0 39.0 34.0 39.0 11 37.20883376589529 39.0 37.0 39.0 34.0 39.0 12 37.158320392672145 39.0 37.0 39.0 34.0 39.0 13 37.11116932900409 39.0 37.0 39.0 33.0 39.0 14 38.341708112980115 40.0 38.0 41.0 33.0 41.0 15 38.426830062875325 40.0 38.0 41.0 34.0 41.0 16 38.41836388415303 40.0 38.0 41.0 34.0 41.0 17 38.35438226894133 40.0 38.0 41.0 34.0 41.0 18 38.22602403162227 40.0 37.0 41.0 34.0 41.0 19 38.054508236776094 40.0 37.0 41.0 34.0 41.0 20 37.93175203883284 40.0 36.0 41.0 33.0 41.0 21 37.95021284220357 40.0 36.0 41.0 33.0 41.0 22 37.998672451051725 40.0 36.0 41.0 34.0 41.0 23 37.9654090696841 40.0 36.0 41.0 34.0 41.0 24 37.95913375395007 40.0 36.0 41.0 33.0 41.0 25 37.73471282591463 40.0 36.0 41.0 33.0 41.0 26 37.69472889767285 40.0 35.0 41.0 33.0 41.0 27 37.66497714118171 40.0 36.0 41.0 33.0 41.0 28 37.55721763115315 40.0 35.0 41.0 33.0 41.0 29 37.45789579419462 40.0 35.0 41.0 33.0 41.0 30 37.307204057033026 40.0 35.0 41.0 32.0 41.0 31 37.27434111220911 40.0 35.0 41.0 32.0 41.0 32 37.01948157720417 40.0 35.0 41.0 32.0 41.0 33 36.88687192546179 40.0 35.0 41.0 31.0 41.0 34 36.58386362895957 40.0 35.0 41.0 30.0 41.0 35 36.40840726704095 39.0 35.0 41.0 30.0 41.0 36 36.28630398427574 39.0 35.0 41.0 30.0 41.0 37 36.210533245735014 39.0 35.0 41.0 30.0 41.0 38 36.11727089600052 39.0 35.0 41.0 29.0 41.0 39 36.00297544713152 39.0 35.0 41.0 29.0 41.0 40 35.86967487267475 39.0 35.0 41.0 28.0 41.0 41 35.746218250133026 39.0 35.0 41.0 27.0 41.0 42 35.681790046369194 39.0 35.0 41.0 27.0 41.0 43 35.66240348800591 39.0 35.0 41.0 27.0 41.0 44 35.68656270700533 39.0 35.0 41.0 27.0 41.0 45 35.68724955748368 39.0 35.0 41.0 28.0 41.0 46 35.56222105183142 38.0 35.0 40.0 27.0 41.0 47 35.38732394366197 38.0 35.0 40.0 27.0 41.0 48 35.37745827315474 38.0 35.0 40.0 27.0 41.0 49 35.32276814316896 38.0 35.0 40.0 27.0 41.0 50 35.209247776559124 38.0 35.0 40.0 26.0 41.0 51 34.224411426151356 37.0 33.0 40.0 23.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 4.0 8 22.0 9 35.0 10 47.0 11 35.0 12 24.0 13 14.0 14 21.0 15 33.0 16 76.0 17 110.0 18 250.0 19 513.0 20 1073.0 21 2105.0 22 3325.0 23 4556.0 24 5946.0 25 7489.0 26 9320.0 27 10043.0 28 10029.0 29 10571.0 30 11960.0 31 14979.0 32 19105.0 33 27020.0 34 43033.0 35 55239.0 36 59671.0 37 88280.0 38 138156.0 39 213474.0 40 138.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 46.34191036736999 17.258136327603243 20.786185889430648 15.613767415596122 2 34.64536253760031 27.671386840704987 21.875780511907216 15.807470109787483 3 29.859942228544746 27.95440724532236 26.69839391010675 15.48725661602615 4 25.851233073072205 23.122020480632447 32.87122503719309 18.155521409102263 5 24.136821701217325 34.329221279876634 23.53508095605243 17.998876062853604 6 22.898861945768676 35.794547547427975 26.985622291963036 14.320968214840313 7 74.11768219184033 4.9512960569895865 16.53531443091859 4.395707320251501 8 73.8320827043991 8.054339917686535 12.841117638754657 5.272459739159708 9 68.26682919413165 5.855196716148859 14.53381041840868 11.344163671310826 10 38.32232019720482 23.845385342122125 21.272275131126 16.56001932954706 11 28.215980540141388 22.253005310195793 28.839711359909654 20.69130278975317 12 23.343414379879896 19.094850521789176 34.60816944845635 22.953565649874573 13 23.812535971418335 20.94988977814458 36.38203546646107 18.855538783976023 14 19.276743731471328 27.163443265607523 32.85371442223115 20.70609858069 15 17.445459185335608 23.22817010001412 36.704556560643745 22.621814154006536 16 20.539136903145938 23.377213938992476 31.4580233909238 24.625625766937787 17 21.304988760628536 24.418484693822144 30.471320598998773 23.805205946550544 18 21.97541455362863 23.02143625050224 30.74429615472325 24.258853041145873 19 21.2379326072084 25.00855169567909 28.160733871230466 25.592781825882042 20 24.319529358107008 25.00787298967281 29.874873760682835 20.797723891537352 21 23.229120288422905 26.814859860783823 29.913152779436835 20.042867071356437 22 22.131245452669756 21.176441843039733 31.44200592917567 25.25030677511484 23 22.78063135947528 24.569836133221845 30.243411122091068 22.40612138521181 24 22.578784193208595 24.462736325431386 29.692437586195663 23.266041895164356 25 21.492990324367174 28.041281614125772 27.884093303072095 22.58163475843496 26 20.69469631978455 23.293461617817933 30.607740506260384 25.40410155613713 27 24.513910758304647 22.63308067371073 28.736276564553087 24.116732003431537 28 20.169377870926404 25.157459793456187 29.980751897661996 24.692410437955413 29 22.01830877322532 25.481609782053926 29.1246321413446 23.375449303376154 30 24.780506477570125 25.524639742851868 28.399638385439857 21.295215394138154 31 25.297273230749184 23.82923213917274 25.657123155277073 25.216371474801 32 25.1565096050474 27.448364047042475 26.067333065470695 21.327793282439433 33 26.913679455297707 22.51905806465625 26.52220183087732 24.04506064916872 34 25.20564791990183 24.100443059280895 27.991464593265064 22.70244442755221 35 25.370709220628317 24.38753569993593 29.02024715757924 21.221507921856507 36 24.53630805651178 26.05810266378533 28.675600247591955 20.729989032110936 37 23.999994570351948 25.04235125479167 28.927128693518085 22.0305254813383 38 22.65697112513167 24.98221790263555 27.274208085831873 25.086602886400904 39 24.724309620250416 25.04995276206196 27.21936864052472 23.0063689771629 40 24.575944487278335 21.876051994309726 30.75013302637723 22.797870492034704 41 22.04301367185379 24.50047237938037 29.28779306525351 24.168720883512332 42 21.959668574283015 24.344098515534224 31.341014475441703 22.355218434741058 43 23.19342035249275 22.84022174682637 29.6488646605927 24.31749324008818 44 23.664035097244994 22.415216045695917 28.65646073821495 25.264288118844135 45 23.428116889463226 21.836551304744425 27.735049464093738 27.00028234169861 46 25.83657302333663 23.40273328482848 27.66894349908239 23.091750192752507 47 21.82854257387036 23.819458772682356 31.577611389229748 22.774387264217534 48 21.42498398253825 24.2022489602224 29.6133004658638 24.75946659137555 49 22.375443873728106 21.86356380379424 32.84176919652068 22.919223125956975 50 22.319654240012163 21.879852747944877 32.33341839781945 23.467074614223506 51 22.17020317743004 21.60429810939655 29.372631316038095 26.852867397135316 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 282.0 1 725.0 2 1168.0 3 7414.0 4 13660.0 5 8583.5 6 3507.0 7 3362.0 8 3217.0 9 3268.0 10 3319.0 11 3215.0 12 3111.0 13 3077.5 14 3044.0 15 2869.0 16 2694.0 17 2531.0 18 2368.0 19 2323.0 20 2278.0 21 2458.0 22 2638.0 23 2717.5 24 2797.0 25 3097.0 26 4106.0 27 4815.0 28 5802.0 29 6789.0 30 7868.0 31 8947.0 32 10110.5 33 11274.0 34 13133.5 35 14993.0 36 16443.5 37 17894.0 38 19485.5 39 21077.0 40 23250.5 41 25424.0 42 27625.5 43 29827.0 44 35595.5 45 41364.0 46 62135.5 47 82907.0 48 73429.0 49 63951.0 50 63594.5 51 63238.0 52 57517.5 53 51797.0 54 48436.0 55 45075.0 56 42993.0 57 40911.0 58 39549.0 59 38187.0 60 35113.5 61 32040.0 62 28394.5 63 24749.0 64 22031.0 65 19313.0 66 17072.5 67 14832.0 68 12581.5 69 10331.0 70 8581.0 71 6831.0 72 6241.5 73 5652.0 74 4773.0 75 2818.5 76 1743.0 77 1237.5 78 732.0 79 501.0 80 270.0 81 247.0 82 224.0 83 150.5 84 77.0 85 54.0 86 31.0 87 22.5 88 14.0 89 12.0 90 10.0 91 6.0 92 2.0 93 1.5 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 736696.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 35.41470673130353 #Duplication Level Percentage of deduplicated Percentage of total 1 72.25857013136596 25.590160700256536 2 8.963666202196995 6.348912195762077 3 3.8468049232660793 4.087004046300083 4 2.302841557404524 3.2621783361655803 5 1.7123066004818641 3.032041804507027 6 1.357915892688686 2.8854115863207634 7 1.1523041370758165 2.856595915586548 8 1.034277251894924 2.9302900443773825 9 0.9439170460035735 3.008569082660541 >10 6.343600761897069 35.43406759952413 >50 0.04404135394853641 1.0785474919687228 >100 0.030789972552033206 2.0791093730839756 >500 0.004287211368004619 1.1265810730340169 >1k 0.0031179719040033598 2.0266588943100308 >5k 0.0011692394640012598 2.5837381899195986 >10k+ 3.8974648800041997E-4 1.6701336662229362 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GAATCTGTCTCTTATACACATCTGACGCAGCAGGTTTCGTATGCCGTCTTC 12100 1.642468535189549 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 8403 1.140633314148577 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCAGCAGGTTTCGTATGC 5201 0.7059899877289953 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCAGCAGGTTTCGTATGCCG 5115 0.6943162444210367 No Hit GAACTGTCTCTTATACACATCTGACGCAGCAGGTTTCGTATGCCGTCTTCT 3597 0.4882611009154387 No Hit GCTGTCTCTTATACACATCTGACGCAGCAGGTTTCGTATGCCGTCTTCTGC 2892 0.39256355403042775 TruSeq Adapter, Index 14 (95% over 21bp) GAATGCTGTCTCTTATACACATCTGACGCAGCAGGTTTCGTATGCCGTCTT 2123 0.2881785702650754 No Hit GAATGACTGTCTCTTATACACATCTGACGCAGCAGGTTTCGTATGCCGTCT 1289 0.17497040841812633 No Hit CGCTGTCTCTTATACACATCTGACGCAGCAGGTTTCGTATGCCGTCTTCTG 1243 0.16872631316038095 TruSeq Adapter, Index 21 (95% over 21bp) GAATGATCTGTCTCTTATACACATCTGACGCAGCAGGTTTCGTATGCCGTC 1195 0.16221073550012488 No Hit GAATATGTCTCTTATACACATCTGACGCAGCAGGTTTCGTATGCCGTCTTC 1181 0.1603103586825502 No Hit CGTTTCTGTCTCTTATACACATCTGACGCAGCAGGTTTCGTATGCCGTCTT 1163 0.15786701705995418 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCAGCAGGTTT 938 0.1273252467775039 No Hit CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 935 0.12691802317373788 No Hit CGTTCTGTCTCTTATACACATCTGACGCAGCAGGTTTCGTATGCCGTCTTC 858 0.11646595067707712 No Hit CCTGTCTCTTATACACATCTGACGCAGCAGGTTTCGTATGCCGTCTTCTGC 833 0.11307242064569376 TruSeq Adapter, Index 14 (95% over 21bp) CTGTCTCTTATACACATCTGACGCAGCAGGTTTCGTATGCCGTCTTCTGCT 800 0.1085929610042677 TruSeq Adapter, Index 21 (95% over 23bp) >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 4.072236037660039E-4 0.0 0.0 0.11782336268963046 0.0 2 4.072236037660039E-4 0.0 0.0 0.7127770477917621 0.0 3 4.072236037660039E-4 0.0 0.0 1.0692334422882708 0.0 4 4.072236037660039E-4 0.0 0.0 1.8992908879646422 0.0 5 4.072236037660039E-4 0.0 0.0 4.342225286956899 0.0 6 4.072236037660039E-4 0.0 0.0 5.721898856516121 0.0 7 4.072236037660039E-4 0.0 0.0 6.645346248656162 0.0 8 4.072236037660039E-4 0.0 0.0 7.928643565324096 0.0 9 4.072236037660039E-4 0.0 0.0 8.52902689847644 0.0 10 4.072236037660039E-4 0.0 0.0 10.155342230716604 0.0 11 4.072236037660039E-4 0.0 0.0 11.062364937504752 0.0 12 4.072236037660039E-4 0.0 0.0 12.620538186714738 0.0 13 4.072236037660039E-4 0.0 0.0 13.065226362027213 0.0 14 4.072236037660039E-4 0.0 0.0 13.32340612681486 0.0 15 4.072236037660039E-4 0.0 0.0 13.660858753135622 0.0 16 4.072236037660039E-4 0.0 0.0 14.089936690303734 0.0 17 4.072236037660039E-4 0.0 0.0 14.584713368879429 0.0 18 4.072236037660039E-4 0.0 0.0 15.12442038507064 0.0 19 4.072236037660039E-4 0.0 0.0 15.611867038778547 0.0 20 4.072236037660039E-4 0.0 0.0 15.947419288281733 0.0 21 4.072236037660039E-4 0.0 0.0 16.304011423979496 0.0 22 4.072236037660039E-4 0.0 0.0 16.740555127216656 0.0 23 4.072236037660039E-4 0.0 0.0 17.15062929620902 0.0 24 4.072236037660039E-4 0.0 0.0 17.49161119376242 0.0 25 5.429648050213385E-4 0.0 0.0 17.784947929675198 0.0 26 5.429648050213385E-4 0.0 0.0 18.07353372354404 0.0 27 5.429648050213385E-4 0.0 0.0 18.412343761877356 0.0 28 5.429648050213385E-4 0.0 0.0 18.698757696526112 0.0 29 5.429648050213385E-4 0.0 0.0 19.01096245941338 0.0 30 6.787060062766731E-4 0.0 0.0 19.44601300943673 0.0 31 6.787060062766731E-4 0.0 0.0 19.802740886335748 0.0 32 8.144472075320078E-4 0.0 0.0 20.138564618241446 0.0 33 9.501884087873424E-4 0.0 0.0 20.497871577964315 0.0 34 9.501884087873424E-4 0.0 0.0 20.884869742743277 0.0 35 9.501884087873424E-4 0.0 0.0 21.251506727333933 0.0 36 0.001085929610042677 0.0 0.0 21.591809918881058 0.0 37 0.001085929610042677 0.0 0.0 21.919353437510182 0.0 38 0.001085929610042677 0.0 0.0 22.277438726421753 0.0 39 0.001085929610042677 0.0 0.0 22.737329916274827 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TGTTCGA 20 7.0316356E-4 45.0 12 ACGTAAG 20 7.0316356E-4 45.0 1 CGCAACA 35 1.2111377E-7 45.0 43 CGTTATT 470 0.0 43.085106 1 CGTTTTT 3435 0.0 42.772923 1 CGATGAA 1095 0.0 42.123287 19 CTCGAAT 75 0.0 42.0 43 CCGATGA 1080 0.0 41.666668 18 TAATACG 265 0.0 41.603775 4 CGAATGC 160 0.0 40.78125 45 TACGGCT 750 0.0 39.899998 7 ATAATAC 375 0.0 39.6 3 CGTTCTG 155 0.0 39.19355 1 GCGATAT 35 6.2452364E-6 38.571426 9 GCGTATG 65 9.094947E-12 38.07692 1 GCGTAAG 65 9.094947E-12 38.07692 1 AATACGG 290 0.0 38.017242 5 GATGAAT 1255 0.0 37.828686 20 GAATCTG 1740 0.0 37.5 1 TCGAATG 180 0.0 37.5 44 >>END_MODULE