SRR3551174_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551174_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	337568
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACCTGTCTCTTATACACATCTGACGCAGGCTAAGTCGTATGCCG	1362	0.40347426296331407	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCAGGCTAAGTCGTATGC	1299	0.384811356526685	No Hit
GAATCTGTCTCTTATACACATCTGACGCAGGCTAAGTCGTATGCCGTCTTC	1261	0.3735543653426865	No Hit
GCTGTCTCTTATACACATCTGACGCAGGCTAAGTCGTATGCCGTCTTCTGC	1133	0.3356360792492179	No Hit
CCTGTCTCTTATACACATCTGACGCAGGCTAAGTCGTATGCCGTCTTCTGC	719	0.21299412266565554	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	574	0.17003981420039813	No Hit
CTGTCTCTTATACACATCTGACGCAGGCTAAGTCGTATGCCGTCTTCTGCT	540	0.15996776945682056	No Hit

Adapter graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACCGGGT	20	7.0262E-4	45.0	4
TTTACGG	55	1.8189894E-12	45.0	2
CGACGGT	20	7.0262E-4	45.0	28
TCCGATT	20	7.0262E-4	45.0	14
ACGCAAC	20	7.0262E-4	45.0	40
TAAACGG	20	7.0262E-4	45.0	2
CCAGCGA	20	7.0262E-4	45.0	14
GTTAGCG	20	7.0262E-4	45.0	1
ATCCGTC	20	7.0262E-4	45.0	40
CGTTAGG	25	3.8849324E-5	45.0	2
CTACGAA	20	7.0262E-4	45.0	11
CGGTCTA	20	7.0262E-4	45.0	31
AGGGCGC	40	6.7902874E-9	45.0	6
CCACGCA	20	7.0262E-4	45.0	38
GCGTCTC	20	7.0262E-4	45.0	22
AGTCGTT	20	7.0262E-4	45.0	18
TGCGTAG	35	1.2085184E-7	45.0	1
CGGACGG	25	3.8849324E-5	45.0	2
TAACGGG	95	0.0	40.263157	3
ACGGGCG	45	1.9213985E-8	40.0	5