SRR3551173_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551173_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	189463
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	255	0.13459092276592263	No Hit
CCTGTCTCTTATACACATCTGACGCGTTCTGCTTCGTATGCCGTCTTCTGC	227	0.11981231163868407	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTCACGA	40	6.7630026E-9	45.0	24
CGACGGT	40	6.7630026E-9	45.0	28
TAGCACG	25	3.8784397E-5	45.0	1
CGCAGGA	20	7.0183614E-4	45.0	4
CTATTGG	20	7.0183614E-4	45.0	2
CGGTCTA	40	6.7630026E-9	45.0	31
GCTACGG	20	7.0183614E-4	45.0	2
GTAAGGC	20	7.0183614E-4	45.0	4
TAGGAAC	20	7.0183614E-4	45.0	6
ACGGTCT	40	6.7630026E-9	45.0	30
GTTAGGA	55	6.002665E-11	40.909092	4
GTAGGGT	50	1.0713848E-9	40.5	4
TACGGGC	50	1.0713848E-9	40.5	4
TCGGGAA	45	1.9137588E-8	40.0	5
ACGGGAC	45	1.9137588E-8	40.0	5
CGGGCGA	45	1.9137588E-8	40.0	6
AACGGGA	85	0.0	39.705883	4
CGGGATA	40	3.4378718E-7	39.375	6
TACGGGA	75	0.0	39.0	4
ACGCCGG	35	6.2207055E-6	38.571426	27