SRR3551172_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551172_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	105303
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	221	0.2098705639915292	No Hit
GCTGTCTCTTATACACATCTGACGCCGATTACGTCGTATGCCGTCTTCTGC	152	0.1443453652792418	No Hit
TATGAAAACTATGCCCTCGTGTACTCCTGCACCACCTTCTTCTGGCTCTTC	139	0.13200003798562243	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCACGGG	20	7.004099E-4	45.000004	3
CCCTCGT	20	7.004099E-4	45.000004	14
CATGCAT	40	6.71389E-9	45.000004	25
TTCAATC	20	7.004099E-4	45.000004	30
ATATGGG	45	3.783498E-10	45.000004	3
GCTTGAG	20	7.004099E-4	45.000004	1
ACGGGAC	45	3.783498E-10	45.000004	5
TCGTGTA	20	7.004099E-4	45.000004	17
ATATCAC	40	6.71389E-9	45.000004	30
CCTCCGC	35	1.1979319E-7	45.000004	45
CATAGGA	20	7.004099E-4	45.000004	4
GCCCTCG	20	7.004099E-4	45.000004	13
GCCTCCG	35	1.1979319E-7	45.000004	44
ATAAGGA	20	7.004099E-4	45.000004	4
TTAGTGA	20	7.004099E-4	45.000004	25
TCTTTAG	20	7.004099E-4	45.000004	22
ATTTGCG	20	7.004099E-4	45.000004	1
CGCTTTC	20	7.004099E-4	45.000004	45
GAACGGG	25	3.866633E-5	45.0	3
GCGATAG	25	3.866633E-5	45.0	9