SRR3551169_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551169_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	141084
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	259	0.1835785773014658	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	249	0.17649060134388025	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGACAACCATCGTATGCCG	153	0.10844603215105894	No Hit
GCTGTCTCTTATACACATCTGACGCGACAACCATCGTATGCCGTCTTCTGC	152	0.10773723455530038	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGACAACCATCGTATGC	149	0.10561084176802472	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TAACGGG	30	2.1519336E-6	45.000004	3
GGCACGG	20	7.0122356E-4	45.0	2
GACAACA	20	7.0122356E-4	45.0	9
GCACGGG	45	3.8016879E-10	45.0	3
TTGAGCG	20	7.0122356E-4	45.0	1
CTACGGG	20	7.0122356E-4	45.0	3
GCGATGT	40	6.7429937E-9	45.0	9
CACACCG	20	7.0122356E-4	45.0	17
ATAGTTA	20	7.0122356E-4	45.0	37
AGTACGG	20	7.0122356E-4	45.0	2
CCCGATG	20	7.0122356E-4	45.0	37
CGAAGGA	25	3.8733677E-5	44.999996	4
TGGGATC	80	0.0	42.1875	6
ATAAGGA	60	3.6379788E-12	41.250004	4
CGGGCGA	55	6.002665E-11	40.909092	6
ATGCGGG	55	6.002665E-11	40.909092	3
TTGGGAT	125	0.0	39.6	5
TAGGGTC	40	3.4295408E-7	39.375	5
GCTACGA	80	0.0	39.375	10
AGCTACG	80	0.0	39.375	9