##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3551168_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 167818 Sequences flagged as poor quality 0 Sequence length 51 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.04394045930711 33.0 31.0 34.0 30.0 34.0 2 32.153511542266024 33.0 31.0 34.0 30.0 34.0 3 32.047575349485754 33.0 31.0 34.0 30.0 34.0 4 35.784957513496764 37.0 35.0 37.0 35.0 37.0 5 35.85945488564993 37.0 35.0 37.0 35.0 37.0 6 35.83899224159506 37.0 35.0 37.0 35.0 37.0 7 26.81119426998296 35.0 10.0 37.0 0.0 37.0 8 31.134312171519145 35.0 19.0 37.0 17.0 37.0 9 35.94375454361273 39.0 32.0 39.0 32.0 39.0 10 36.73704251033858 38.0 35.0 39.0 33.0 39.0 11 37.05191934119105 39.0 37.0 39.0 34.0 39.0 12 37.03653958454993 39.0 37.0 39.0 33.0 39.0 13 36.99489923607718 39.0 37.0 39.0 33.0 39.0 14 38.199043010880835 40.0 37.0 41.0 33.0 41.0 15 38.25340547497885 40.0 37.0 41.0 34.0 41.0 16 38.174689246683904 40.0 37.0 41.0 33.0 41.0 17 38.02085592725452 40.0 37.0 41.0 33.0 41.0 18 37.924328737084224 40.0 36.0 41.0 33.0 41.0 19 37.82596622531552 40.0 36.0 41.0 33.0 41.0 20 37.913966320656904 40.0 36.0 41.0 33.0 41.0 21 37.84015421468496 40.0 36.0 41.0 33.0 41.0 22 37.85393104434566 40.0 36.0 41.0 33.0 41.0 23 37.79176846345446 40.0 36.0 41.0 33.0 41.0 24 37.74402030771431 40.0 36.0 41.0 33.0 41.0 25 37.65919031331561 40.0 35.0 41.0 33.0 41.0 26 37.524508693942245 40.0 35.0 41.0 33.0 41.0 27 37.41475288705622 39.0 35.0 41.0 33.0 41.0 28 37.35646354979799 39.0 35.0 41.0 33.0 41.0 29 37.35107676172997 39.0 35.0 41.0 33.0 41.0 30 37.201760240260285 39.0 35.0 41.0 32.0 41.0 31 37.09014527643042 39.0 35.0 41.0 32.0 41.0 32 36.93043058551526 39.0 35.0 41.0 31.0 41.0 33 36.791172579818614 39.0 35.0 41.0 31.0 41.0 34 36.60144323016601 39.0 35.0 41.0 30.0 41.0 35 36.51335375227926 39.0 35.0 41.0 30.0 41.0 36 36.35748251081529 39.0 35.0 41.0 30.0 41.0 37 36.335965152724974 39.0 35.0 41.0 30.0 41.0 38 36.24645747178491 39.0 35.0 41.0 30.0 41.0 39 36.20249913596873 39.0 35.0 40.0 30.0 41.0 40 36.02381746892467 38.0 35.0 40.0 29.0 41.0 41 35.92103945941437 38.0 35.0 40.0 29.0 41.0 42 35.867004731316065 38.0 35.0 40.0 29.0 41.0 43 35.83691260770597 38.0 35.0 40.0 29.0 41.0 44 35.66881383403449 38.0 35.0 40.0 28.0 41.0 45 35.59258244050102 38.0 35.0 40.0 28.0 41.0 46 35.434869918602296 38.0 34.0 40.0 27.0 41.0 47 35.28508264906029 38.0 34.0 40.0 27.0 41.0 48 35.23392008008676 38.0 34.0 40.0 27.0 41.0 49 35.08325090276371 37.0 34.0 40.0 26.0 41.0 50 34.891704108021784 37.0 34.0 40.0 26.0 41.0 51 32.85311468376455 35.0 31.0 39.0 20.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 8.0 9 10.0 10 17.0 11 15.0 12 6.0 13 4.0 14 5.0 15 12.0 16 20.0 17 32.0 18 76.0 19 106.0 20 238.0 21 331.0 22 448.0 23 731.0 24 993.0 25 1303.0 26 1667.0 27 2018.0 28 2262.0 29 2786.0 30 3301.0 31 4338.0 32 5516.0 33 7878.0 34 12476.0 35 15429.0 36 15880.0 37 24562.0 38 31518.0 39 33825.0 40 7.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 44.63525962650014 19.589078644722257 23.010642481736166 12.765019247041437 2 30.620076511458844 26.652683264012207 24.41811962959873 18.309120594930224 3 32.99705633483893 24.886484167371794 25.765412530241093 16.35104696754818 4 29.00404009105102 25.496669010475635 26.98399456554124 18.515296332932106 5 25.785672573859774 30.507454504284404 23.967631600900976 19.739241320954847 6 26.203982886221976 35.63443730708267 24.356147731470998 13.80543207522435 7 60.5322432635355 28.120940542730814 7.107104124706527 4.239712069027161 8 81.3250068526618 6.626226030580748 8.090908007484298 3.9578591092731408 9 75.13913882896948 8.337603832723547 9.752827467852079 6.7704298704548975 10 43.69376348186726 27.655555423136967 15.812964044381413 12.837717050614355 11 34.890774529549866 24.974079061840804 22.392711151366363 17.742435257242967 12 33.586385250688245 21.950565493570416 25.70642005029258 18.75662920544876 13 26.6580462167348 23.906255586409088 26.805229474788163 22.630468722067953 14 20.859502556340797 26.957775685564123 28.05360569188049 24.12911606621459 15 21.980359675362596 26.025813679104743 32.21227758643292 19.78154905909974 16 25.892931628311622 24.969311992754058 29.39493975616442 19.742816622769904 17 24.33648357148816 25.62359222491032 28.012489721007285 22.027434482594238 18 25.886972791953188 27.301600543445876 25.991252428225813 20.820174236375124 19 26.059183162711985 29.14466862911011 23.966439833629288 20.82970837454862 20 29.707778664982303 25.817254406559485 26.009128937301124 18.465837991157088 21 26.450082827825383 29.28648893444088 25.425162974174402 18.838265263559332 22 25.445423017793082 24.729170887509085 27.234861576231395 22.590544518466434 23 26.9136802965117 26.022238377289682 27.53757046323994 19.52651086295868 24 26.69677865306463 23.33301552872755 28.04585920461452 21.924346613593297 25 23.77218176834428 26.010916588208655 25.956691177346887 24.26021046610018 26 22.34742399504225 27.11151366361177 27.114493081790986 23.426569259554995 27 22.682310598386344 28.585133895052973 25.58247625403711 23.150079252523568 28 20.683716883766937 30.108808351905044 27.75625975759454 21.451215006733484 29 24.521207498599672 26.311241940673824 26.574026624080847 22.593523936645653 30 22.97310181267802 27.017959932784326 27.764006244860507 22.24493200967715 31 25.64921522125159 27.772944499398157 24.725595585694027 21.85224469365622 32 26.721209882134218 27.51015981599113 24.982421432742612 20.786208869132036 33 25.246397883421324 27.737191481247542 24.765519789295546 22.25089084603559 34 22.610208678449272 27.942175451977736 28.499326651491497 20.94828921808149 35 23.262105376062163 27.765198012132192 26.520397096854925 22.45229951495072 36 22.047694526212922 32.67229975330417 24.67494547664732 20.605060243835585 37 24.061781215364263 31.294616787233785 24.78101276382748 19.862589233574468 38 22.831281507347246 30.098678330095694 24.34423005875413 22.725810103802928 39 24.743472094769334 27.122239569056955 25.533613795897935 22.600674540275776 40 24.83523817468925 25.677817635772087 26.13783980264334 23.349104386895327 41 20.783825334588663 28.36763636797006 27.46963972875377 23.378898568687507 42 22.57147624211944 26.2671465516214 26.616930245861585 24.544446960397572 43 23.350892037802858 26.503712355051306 25.792227293854058 24.353168313291782 44 22.0542492462072 27.10793836179671 25.652194639430814 25.185617752565282 45 23.135778045263322 26.770072340273394 25.48415545412292 24.609994160340367 46 22.566113289396846 29.22809233812821 23.95630981181995 24.249484560654995 47 21.152677305175846 27.031069372772887 28.79011786578317 23.026135456268097 48 22.451107747679032 25.694502377575706 28.641146956822272 23.213242917922987 49 22.404628824083233 25.748727788437474 27.70560964854783 24.141033738931462 50 19.921581713522983 25.896506930126684 28.880096294795553 25.301815061554777 51 19.823260913608788 25.185617752565282 27.198512674444935 27.792608659380996 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 100.0 1 230.0 2 360.0 3 783.5 4 1207.0 5 859.5 6 512.0 7 446.0 8 380.0 9 386.5 10 393.0 11 362.0 12 331.0 13 353.5 14 376.0 15 377.0 16 378.0 17 411.5 18 445.0 19 443.0 20 441.0 21 533.5 22 626.0 23 674.0 24 722.0 25 859.5 26 1236.0 27 1475.0 28 1829.0 29 2183.0 30 2576.0 31 2969.0 32 3505.5 33 4042.0 34 4613.0 35 5184.0 36 5152.0 37 5120.0 38 5662.5 39 6205.0 40 6745.5 41 7286.0 42 8184.0 43 9082.0 44 11335.5 45 13589.0 46 12745.0 47 11901.0 48 11800.5 49 11700.0 50 10902.5 51 10105.0 52 9895.5 53 9686.0 54 9465.5 55 9245.0 56 9571.5 57 9898.0 58 9801.0 59 9704.0 60 9671.0 61 9638.0 62 8473.0 63 7308.0 64 6148.5 65 4989.0 66 4118.0 67 3247.0 68 2678.5 69 2110.0 70 1806.0 71 1502.0 72 1231.5 73 961.0 74 765.5 75 460.0 76 350.0 77 278.0 78 206.0 79 172.5 80 139.0 81 108.5 82 78.0 83 58.0 84 38.0 85 29.0 86 20.0 87 16.5 88 13.0 89 7.0 90 1.0 91 1.5 92 2.0 93 2.5 94 3.0 95 2.0 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 167818.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 44.64360199740195 #Duplication Level Percentage of deduplicated Percentage of total 1 66.95808862786973 29.892502592093816 2 10.931660437800321 9.760573955118044 3 6.0744794447410575 8.135599280172567 4 4.251201281366791 7.591557520647369 5 3.000533902829685 6.69773206688198 6 2.08756006406834 5.591772038756272 7 1.6791243993593168 5.2473512972386755 8 1.2506673785371063 4.466743734283569 9 0.9917245061398825 3.984673872886103 >10 2.7335824879871864 15.834415855271782 >50 0.022690870261612386 0.7055262248388134 >100 0.01601708489054992 1.4569354896375837 >500 0.0026695141484249867 0.634616072173426 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GAATGATACCTGTCTCTTATACACATCTGACGCCAAACAGTTCGTATGCCG 541 0.3223730469913835 No Hit GAATCTGTCTCTTATACACATCTGACGCCAAACAGTTCGTATGCCGTCTTC 524 0.31224302518204244 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 500 0.29794181792179625 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCCAAACAGTTCGTATGC 477 0.2842364942973936 No Hit GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT 227 0.1352655853364955 No Hit GCTGTCTCTTATACACATCTGACGCCAAACAGTTCGTATGCCGTCTTCTGC 193 0.11500554171781335 Illumina Single End Adapter 1 (95% over 21bp) GAGGAGCTGAGAACCCCAGTCTAATAATGTCCATCGACACCTCCTTATCCC 180 0.10725905445184664 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.06375954903526439 0.0 2 0.0 0.0 0.0 0.3170100942687912 0.0 3 0.0 0.0 0.0 0.4081802905528608 0.0 4 0.0 0.0 0.0 0.5690688722306309 0.0 5 0.0 0.0 0.0 1.2549309370866057 0.0 6 0.0 0.0 0.0 1.5189073877653172 0.0 7 0.0 0.0 0.0 1.833533947490734 0.0 8 0.0 0.0 0.0 2.3722127542933418 0.0 9 0.0 0.0 0.0 2.5944773504630017 0.0 10 0.0 0.0 0.0 3.4352691606383106 0.0 11 0.0 0.0 0.0 4.014468054678282 0.0 12 0.0 0.0 0.0 4.854068097581904 0.0 13 0.0 0.0 0.0 5.057860301040413 0.0 14 0.0 0.0 0.0 5.1508181482320134 0.0 15 0.0 0.0 0.0 5.34269267897365 0.0 16 0.0 0.0 0.0 5.662682191421659 0.0 17 0.0 0.0 0.0 6.030342394737156 0.0 18 0.0 0.0 0.0 6.439714452561704 0.0 19 0.0 0.0 0.0 6.7126291577780695 0.0 20 0.0 0.0 0.0 7.001632721162212 0.0 21 0.0 0.0 0.0 7.336519324506311 0.0 22 0.0 0.0 0.0 7.675577113301315 0.0 23 0.0 0.0 0.0 7.99497074211348 0.0 24 0.0 0.0 0.0 8.273248400052438 0.0 25 0.0 0.0 0.0 8.533649548916088 0.0 26 0.0 0.0 0.0 8.778557723247804 0.0 27 0.0 0.0 0.0 9.015719410313555 0.0 28 0.0 0.0 0.0 9.276716442813047 0.0 29 0.0 0.0 0.0 9.515665780786328 0.0 30 5.958836358435925E-4 0.0 0.0 9.830292340511745 0.0 31 5.958836358435925E-4 0.0 0.0 10.12644650752601 0.0 32 5.958836358435925E-4 0.0 0.0 10.426175976355337 0.0 33 5.958836358435925E-4 0.0 0.0 10.715775423375323 0.0 34 5.958836358435925E-4 0.0 0.0 10.963663015886258 0.0 35 5.958836358435925E-4 0.0 0.0 11.238961255645997 0.0 36 5.958836358435925E-4 0.0 0.0 11.532136004481044 0.0 37 5.958836358435925E-4 0.0 0.0 11.860467887830865 0.0 38 5.958836358435925E-4 0.0 0.0 12.212635116614427 0.0 39 5.958836358435925E-4 0.0 0.0 12.535604047241655 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CCTTCGG 20 7.016057E-4 45.000004 24 CACGCCG 30 2.1543947E-6 45.000004 26 CTACATT 20 7.016057E-4 45.000004 22 CGTAACC 30 2.1543947E-6 45.000004 35 CGGTCTA 30 2.1543947E-6 45.000004 31 TAGGAAC 20 7.016057E-4 45.000004 6 GCGAGAC 55 1.8189894E-12 45.0 21 ACCGGAG 25 3.8765313E-5 45.0 32 CGACACC 55 1.8189894E-12 45.0 35 ACCTCCT 50 2.1827873E-11 45.0 39 CCATCGA 55 1.8189894E-12 45.0 31 TCGTCCC 25 3.8765313E-5 45.0 38 CGAATAT 35 1.2036435E-7 45.0 14 AACGACG 25 3.8765313E-5 45.0 13 CACCGGA 25 3.8765313E-5 45.0 31 GCTCGTA 25 3.8765313E-5 45.0 32 TCGACAC 55 1.8189894E-12 45.0 34 TAGCTCG 25 3.8765313E-5 45.0 30 ACACGAC 60 3.6379788E-12 41.250004 26 GTAGGGT 60 3.6379788E-12 41.250004 4 >>END_MODULE