SRR3551167_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551167_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	143322
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATCTGTCTCTTATACACATCTGACGCATGCCTGTTCGTATGCCGTCTTC	668	0.46608336473116474	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCATGCCTGTTCGTATGCCG	651	0.4542219617365094	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCATGCCTGTTCGTATGC	482	0.33630566137787643	No Hit
GCTGTCTCTTATACACATCTGACGCATGCCTGTTCGTATGCCGTCTTCTGC	361	0.25188038123944684	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	353	0.2462985445360796	No Hit
CTGTCTCTTATACACATCTGACGCATGCCTGTTCGTATGCCGTCTTCTGCT	195	0.13605726964457654	Illumina Single End Adapter 2 (95% over 21bp)
CCTGTCTCTTATACACATCTGACGCATGCCTGTTCGTATGCCGTCTTCTGC	183	0.12768451458952568	No Hit
GAATGAAACCTGTCTCTTATACACATCTGACGCATGCCTGTTCGTATGCCG	173	0.12070721871031663	No Hit
GAATGACTGTCTCTTATACACATCTGACGCATGCCTGTTCGTATGCCGTCT	169	0.117916300358633	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	163	0.11372992283110758	No Hit
GAATCTATCTCTTATACACATCTGACGCATGCCTGTTCGTATGCCGTCTTC	157	0.10954354530358214	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AGCGTTG	20	7.0126134E-4	45.0	1
CACGGGC	20	7.0126134E-4	45.0	4
GCGCGGG	20	7.0126134E-4	45.0	3
AGCTTAG	20	7.0126134E-4	45.0	2
CGTTGAT	20	7.0126134E-4	45.0	25
GCGTTGG	35	1.2020064E-7	45.0	2
ACGGGCG	25	3.873679E-5	45.0	5
ACGGGAC	25	3.873679E-5	45.0	5
TGATTCA	20	7.0126134E-4	45.0	44
TACGAAT	25	3.873679E-5	45.0	12
CGGGATT	25	3.873679E-5	45.0	6
CGAATAT	25	3.873679E-5	45.0	14
TAGGATG	25	3.873679E-5	45.0	6
GGCGATA	35	1.2020064E-7	45.0	8
AGCTACG	25	3.873679E-5	45.0	9
TAGCTAG	25	3.873679E-5	45.0	1
AAGCTAC	25	3.873679E-5	45.0	8
ACGGGCA	30	2.1521773E-6	44.999996	5
CGTTGGG	45	1.9081199E-8	40.0	3
ACGGGAG	45	1.9081199E-8	40.0	5