##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3551167_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 143322 Sequences flagged as poor quality 0 Sequence length 51 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.878769484098743 31.0 31.0 34.0 30.0 34.0 2 31.981852053418176 33.0 31.0 34.0 30.0 34.0 3 31.8893889284269 33.0 31.0 34.0 30.0 34.0 4 35.659410278952286 37.0 35.0 37.0 33.0 37.0 5 35.74697534223636 37.0 35.0 37.0 35.0 37.0 6 35.71789397301182 37.0 35.0 37.0 35.0 37.0 7 26.867033672429912 35.0 11.0 37.0 0.0 37.0 8 31.128138038821675 35.0 19.0 37.0 17.0 37.0 9 35.837184800658655 39.0 32.0 39.0 32.0 39.0 10 36.559753561909545 37.0 35.0 39.0 32.0 39.0 11 36.92387770195783 39.0 37.0 39.0 33.0 39.0 12 37.02999539498472 39.0 37.0 39.0 33.0 39.0 13 36.982933534279454 39.0 37.0 39.0 33.0 39.0 14 38.17443239698023 40.0 37.0 41.0 33.0 41.0 15 38.213672709004896 40.0 37.0 41.0 33.0 41.0 16 38.170371610778524 40.0 37.0 41.0 33.0 41.0 17 38.05630677774522 40.0 37.0 41.0 33.0 41.0 18 37.967416028244095 40.0 37.0 41.0 33.0 41.0 19 37.86715926375574 40.0 37.0 41.0 33.0 41.0 20 37.939604526869566 40.0 37.0 41.0 33.0 41.0 21 37.89907341510724 40.0 37.0 41.0 33.0 41.0 22 37.897803547257226 40.0 36.0 41.0 33.0 41.0 23 37.88101617337185 40.0 36.0 41.0 33.0 41.0 24 37.806331198280795 40.0 36.0 41.0 33.0 41.0 25 37.721724508449505 39.0 36.0 41.0 33.0 41.0 26 37.56479116953434 39.0 36.0 41.0 33.0 41.0 27 37.47028369685045 39.0 36.0 41.0 33.0 41.0 28 37.46710204992953 39.0 36.0 41.0 33.0 41.0 29 37.47478405269254 39.0 36.0 41.0 33.0 41.0 30 37.3987175730174 39.0 36.0 41.0 32.0 41.0 31 37.28158272979724 39.0 36.0 41.0 32.0 41.0 32 37.19186168208649 39.0 36.0 41.0 32.0 41.0 33 37.135478154086606 39.0 35.0 41.0 32.0 41.0 34 37.00830298209626 39.0 35.0 41.0 31.0 41.0 35 36.943574608224836 39.0 35.0 41.0 31.0 41.0 36 36.74235637236433 39.0 35.0 41.0 30.0 41.0 37 36.712458659521914 39.0 35.0 41.0 30.0 41.0 38 36.62780312861947 39.0 35.0 41.0 30.0 41.0 39 36.5997055581139 39.0 35.0 41.0 30.0 41.0 40 36.42971072131285 39.0 35.0 40.0 30.0 41.0 41 36.302340185037885 39.0 35.0 40.0 30.0 41.0 42 36.2547829363252 39.0 35.0 40.0 30.0 41.0 43 36.24489610806436 39.0 35.0 40.0 30.0 41.0 44 36.08220650004884 39.0 35.0 40.0 29.0 41.0 45 36.00785643515999 38.0 35.0 40.0 29.0 41.0 46 35.861989087509244 38.0 35.0 40.0 29.0 41.0 47 35.71366573170902 38.0 35.0 40.0 28.0 41.0 48 35.59173748621984 38.0 35.0 40.0 28.0 41.0 49 35.418937776475346 38.0 34.0 40.0 27.0 41.0 50 35.18244930994544 38.0 34.0 40.0 26.0 41.0 51 32.86979668159808 36.0 31.0 39.0 19.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 9.0 9 8.0 10 10.0 11 6.0 12 5.0 13 5.0 14 4.0 15 5.0 16 13.0 17 29.0 18 41.0 19 78.0 20 134.0 21 203.0 22 355.0 23 461.0 24 740.0 25 1003.0 26 1252.0 27 1583.0 28 1886.0 29 2160.0 30 2800.0 31 3688.0 32 4795.0 33 6597.0 34 9877.0 35 12376.0 36 14134.0 37 21799.0 38 27800.0 39 29462.0 40 4.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.61647200011164 20.960494550731916 23.55255996985808 11.870473479298363 2 30.591953782392096 26.884218752180406 24.89289850825414 17.63092895717336 3 32.15486805933492 25.777619625737845 26.081829726071366 15.985682588855862 4 29.204867361605334 25.038723992129608 27.15703102105748 18.599377625207573 5 25.82018113060102 29.257197080699406 24.80010047306066 20.12252131563891 6 25.990427150053723 35.10277556830075 24.431699250638424 14.475098031007102 7 59.214216938083474 28.041054408953265 7.99109697045813 4.753631682505128 8 78.44155119241987 7.012182358605099 9.428419921575195 5.11784652739984 9 71.66520143453204 9.043273189042853 11.04505937678793 8.24646599963718 10 38.81469697603996 28.02640208760693 18.825442011693948 14.333458924659158 11 29.105789760120565 26.915616583636847 25.021280752431586 18.957312903811 12 29.097417005065516 22.808082499546476 29.09253289795007 19.00196759743794 13 24.27052371582869 25.57178939730118 29.913760622932976 20.243926263937148 14 19.069647367466263 29.458840931608542 28.210602698818043 23.260909002107145 15 18.190508086685924 27.61125298279399 34.857174753352595 19.341064177167496 16 20.680704985975634 26.582799570198574 32.13602936046106 20.600466083364733 17 19.81482256736579 26.51930617769777 29.35557695259625 24.310294302340186 18 21.326802584390396 27.83592191010452 29.604666415484015 21.23260909002107 19 23.207183823837234 29.08067149495541 26.208816511072968 21.503328170134385 20 25.47131633664057 27.234479005316697 28.209904969230127 19.084299688812603 21 23.987245503132808 28.238511882334883 27.52194359554011 20.252299018992197 22 21.661712786592428 26.808166227097026 27.518454947600507 24.01166603871004 23 21.467046231562495 28.732504430582885 27.847085583511255 21.953363754343368 24 22.236641967039255 25.257811082736776 29.27952442751287 23.226022522711098 25 21.089574524497287 28.856002567644882 26.45441732602113 23.600005581836704 26 20.294162794267454 30.344957508268095 27.02655558811627 22.33432410934818 27 21.873124851732463 29.189517310671075 27.849178772275017 21.088179065321444 28 19.895061469976696 29.03252815338887 29.039505449268084 22.03290492736635 29 21.143299702767195 27.620323467436958 28.62365861486722 22.612718214928623 30 21.240981845076124 27.084467143913706 28.2859574943135 23.38859351669667 31 23.060660610373844 28.10664099021783 26.241609801705252 22.591088597703074 32 23.389988975872512 29.035319071740556 25.497132331393647 22.077559620993288 33 22.004995743849516 27.268667755124827 26.793513905750686 23.932822595274974 34 21.233306819608995 27.298670127405423 28.890191317453006 22.577831735532577 35 21.7775358981873 25.813901564309738 27.990120149035043 24.418442388467927 36 22.347580971518678 27.939883618704737 28.02012252131564 21.69241288846095 37 21.665899164119953 27.872203848676406 30.211691156975203 20.25020583022844 38 21.994529800030698 26.614197401655016 26.605126917012043 24.786145881302243 39 21.97010926445347 25.143383430317744 28.9599642762451 23.926543028983687 40 22.620393240395753 24.494494913551303 30.22564574873362 22.65946609731932 41 19.517589762911484 26.698622681793445 30.53892633371011 23.244861221584962 42 21.230515901257306 26.305800923793974 29.864919551778513 22.598763623170203 43 22.85692357070094 26.653270258578587 27.824060507109866 22.66574566361061 44 21.100738197904022 27.034928343171323 26.985389542428933 24.87894391649572 45 20.458826977016788 25.86971993134341 26.37417842341022 27.297274668229583 46 22.007786662201198 27.487057116144065 26.871659619597825 23.63349660205691 47 20.479758864654414 26.284171306568428 31.324569849709043 21.911499979068115 48 21.64147862854272 24.477051673853282 29.29836312638674 24.583106571217257 49 19.846918128410156 24.78335496295056 31.323174390533204 24.046552518106083 50 19.185470479061134 24.082834456677972 30.513808068544957 26.21788699571594 51 19.25873208579283 24.440769735281396 28.01244749584851 28.288050683077266 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 56.0 1 203.0 2 350.0 3 564.0 4 778.0 5 568.5 6 359.0 7 347.0 8 335.0 9 312.0 10 289.0 11 300.0 12 311.0 13 316.5 14 322.0 15 327.5 16 333.0 17 355.5 18 378.0 19 410.5 20 443.0 21 449.5 22 456.0 23 586.0 24 716.0 25 846.0 26 1136.5 27 1297.0 28 1716.5 29 2136.0 30 2634.5 31 3133.0 32 3379.0 33 3625.0 34 4086.0 35 4547.0 36 4776.0 37 5005.0 38 5602.0 39 6199.0 40 6803.0 41 7407.0 42 8074.0 43 8741.0 44 9751.5 45 10762.0 46 13148.5 47 15535.0 48 14592.0 49 13649.0 50 12779.0 51 11909.0 52 10306.5 53 8704.0 54 7622.5 55 6541.0 56 6193.0 57 5845.0 58 5784.5 59 5724.0 60 5433.5 61 5143.0 62 4701.5 63 4260.0 64 3488.5 65 2717.0 66 2170.5 67 1624.0 68 1328.0 69 1032.0 70 827.0 71 622.0 72 538.5 73 455.0 74 366.0 75 205.0 76 133.0 77 106.0 78 79.0 79 66.0 80 53.0 81 39.0 82 25.0 83 22.0 84 19.0 85 15.5 86 12.0 87 7.5 88 3.0 89 3.5 90 4.0 91 2.5 92 1.0 93 1.5 94 2.0 95 1.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 143322.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 50.514226706297706 #Duplication Level Percentage of deduplicated Percentage of total 1 73.6677808779248 37.21270984217357 2 9.75026934445703 9.850546322267343 3 4.634105914528026 7.022648302423913 4 3.1395894914224147 6.3437574133768715 5 2.265255946296859 5.721382620951424 6 1.5483853145114506 4.692929208356009 7 1.2251719660764109 4.332203011400901 8 0.8991961103897896 3.6337756938920753 9 0.7679770159396668 3.4914388579562106 >10 2.049780380673499 13.788532116492933 >50 0.030387579767396887 1.0375238972383862 >100 0.019337550761070747 1.952247387002693 >500 0.0027625072515815355 0.9203053264676742 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GAATCTGTCTCTTATACACATCTGACGCATGCCTGTTCGTATGCCGTCTTC 668 0.46608336473116474 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCATGCCTGTTCGTATGCCG 651 0.4542219617365094 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCATGCCTGTTCGTATGC 482 0.33630566137787643 No Hit GCTGTCTCTTATACACATCTGACGCATGCCTGTTCGTATGCCGTCTTCTGC 361 0.25188038123944684 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 353 0.2462985445360796 No Hit CTGTCTCTTATACACATCTGACGCATGCCTGTTCGTATGCCGTCTTCTGCT 195 0.13605726964457654 Illumina Single End Adapter 2 (95% over 21bp) CCTGTCTCTTATACACATCTGACGCATGCCTGTTCGTATGCCGTCTTCTGC 183 0.12768451458952568 No Hit GAATGAAACCTGTCTCTTATACACATCTGACGCATGCCTGTTCGTATGCCG 173 0.12070721871031663 No Hit GAATGACTGTCTCTTATACACATCTGACGCATGCCTGTTCGTATGCCGTCT 169 0.117916300358633 No Hit GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT 163 0.11372992283110758 No Hit GAATCTATCTCTTATACACATCTGACGCATGCCTGTTCGTATGCCGTCTTC 157 0.10954354530358214 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.18978244791448626 0.0 2 0.0 0.0 0.0 0.9133280305884651 0.0 3 0.0 0.0 0.0 1.1840471107017765 0.0 4 0.0 0.0 0.0 1.5810552462287715 0.0 5 0.0 0.0 0.0 3.0867556969620855 0.0 6 0.0 0.0 0.0 3.6456370968867304 0.0 7 0.0 0.0 0.0 4.337784848104269 0.0 8 0.0 0.0 0.0 5.466711321360294 0.0 9 0.0 0.0 0.0 5.863719456887289 0.0 10 0.0 0.0 0.0 7.326858402757427 0.0 11 0.0 0.0 0.0 8.596726252773475 0.0 12 0.0 0.0 0.0 9.967764893038055 0.0 13 0.0 0.0 0.0 10.412916370131592 0.0 14 0.0 0.0 0.0 10.595023792578948 0.0 15 0.0 0.0 0.0 10.970402310880395 0.0 16 0.0 0.0 0.0 11.713484322016159 0.0 17 0.0 0.0 0.0 12.568203067219269 0.0 18 0.0 0.0 0.0 13.450133266351292 0.0 19 0.0 0.0 0.0 13.993664615341679 0.0 20 0.0 0.0 0.0 14.476493490182945 0.0 21 0.0 0.0 0.0 15.141429787471568 0.0 22 0.0 0.0 0.0 15.869859477260993 0.0 23 0.0 0.0 0.0 16.62410516180349 0.0 24 0.0 0.0 0.0 17.212291204420815 0.0 25 0.0 0.0 0.0 17.7090746710205 0.0 26 0.0 0.0 0.0 18.154923877701957 0.0 27 0.0 0.0 0.0 18.630077727076095 0.0 28 0.0 0.0 0.0 19.132443030379147 0.0 29 0.0 0.0 0.0 19.623644660275463 0.0 30 0.0 0.0 0.0 20.16647827967793 0.0 31 0.0 0.0 0.0 20.72326649083881 0.0 32 0.0 0.0 0.0 21.310754803868214 0.0 33 0.0 0.0 0.0 21.78660638283027 0.0 34 0.0 0.0 0.0 22.259667043440643 0.0 35 0.0 0.0 0.0 22.743891377457754 0.0 36 0.0 0.0 0.0 23.278352241805166 0.0 37 0.0 0.0 0.0 23.75978565747059 0.0 38 0.0 0.0 0.0 24.247498639427302 0.0 39 0.0 0.0 0.0 24.739397998911542 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AGCGTTG 20 7.0126134E-4 45.0 1 CACGGGC 20 7.0126134E-4 45.0 4 GCGCGGG 20 7.0126134E-4 45.0 3 AGCTTAG 20 7.0126134E-4 45.0 2 CGTTGAT 20 7.0126134E-4 45.0 25 GCGTTGG 35 1.2020064E-7 45.0 2 ACGGGCG 25 3.873679E-5 45.0 5 ACGGGAC 25 3.873679E-5 45.0 5 TGATTCA 20 7.0126134E-4 45.0 44 TACGAAT 25 3.873679E-5 45.0 12 CGGGATT 25 3.873679E-5 45.0 6 CGAATAT 25 3.873679E-5 45.0 14 TAGGATG 25 3.873679E-5 45.0 6 GGCGATA 35 1.2020064E-7 45.0 8 AGCTACG 25 3.873679E-5 45.0 9 TAGCTAG 25 3.873679E-5 45.0 1 AAGCTAC 25 3.873679E-5 45.0 8 ACGGGCA 30 2.1521773E-6 44.999996 5 CGTTGGG 45 1.9081199E-8 40.0 3 ACGGGAG 45 1.9081199E-8 40.0 5 >>END_MODULE