SRR3551164_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3551164_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	279742
Sequences flagged as poor quality	0
Sequence length	51
%GC	43

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5248	1.8760143274874705	No Hit
GAATCTGTCTCTTATACACATCTGACGCAAGTCTTCTCGTATGCCGTCTTC	1474	0.5269140851212903	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAAGTCTTCTCGTATGCCG	947	0.3385262134395264	No Hit
CGTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	881	0.3149330454490209	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCAAGTCTTCTCGTATGC	720	0.2573800144418786	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCAAGTCTTCTCGTATGCCGTCTT	629	0.22485004039436338	No Hit
GAATGCTGTCTCTTATACACATCTGACGCAAGTCTTCTCGTATGCCGTCTT	519	0.1855280937435208	TruSeq Adapter, Index 23 (95% over 21bp)
CGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	500	0.17873612114019347	No Hit
GAACTGTCTCTTATACACATCTGACGCAAGTCTTCTCGTATGCCGTCTTCT	467	0.1669395371449407	TruSeq Adapter, Index 23 (95% over 23bp)
CGTTCTGTCTCTTATACACATCTGACGCAAGTCTTCTCGTATGCCGTCTTC	412	0.1472785638195194	TruSeq Adapter, Index 23 (95% over 22bp)
CGTTTTCTGTCTCTTATACACATCTGACGCAAGTCTTCTCGTATGCCGTCT	407	0.1454912026081175	No Hit
GCTGTCTCTTATACACATCTGACGCAAGTCTTCTCGTATGCCGTCTTCTGC	360	0.1286900072209393	Illumina PCR Primer Index 7 (95% over 23bp)
GAATCTATCTCTTATACACATCTGACGCAAGTCTTCTCGTATGCCGTCTTC	284	0.10152211680762989	TruSeq Adapter, Index 23 (95% over 22bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GGTACGT	20	7.0241233E-4	45.000004	8
TACGCGG	20	7.0241233E-4	45.000004	2
ATGCACG	20	7.0241233E-4	45.000004	1
AAATTCG	35	1.2075179E-7	45.0	30
CGTACAT	35	1.2075179E-7	45.0	35
CGTTTTT	1900	0.0	43.934208	1
CGTTTTA	355	0.0	43.09859	1
AGGCGAT	70	0.0	41.785713	7
GGCCGGT	45	1.9193976E-8	40.0	9
GCGATGA	45	1.9193976E-8	40.0	9
CGGTTTT	210	0.0	39.642857	1
CTCGTCC	40	3.4457298E-7	39.375004	37
TTCGTAC	40	3.4457298E-7	39.375004	33
CCTCGTC	40	3.4457298E-7	39.375004	36
TCGTCCC	40	3.4457298E-7	39.375004	38
CGTCCCC	40	3.4457298E-7	39.375004	39
TGCACGG	40	3.4457298E-7	39.375004	2
ATGGGTC	35	6.23135E-6	38.571426	5
CTGTATC	35	6.23135E-6	38.571426	3
CGCATGG	35	6.23135E-6	38.571426	2